Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j31a_ | Hypothetical protein PH0642 | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase | α+β |
| Hit | d1uuya_ | Plant CNX1 G domain | Molybdenum cofactor biosynthesis proteins | Molybdenum cofactor biosynthesis proteins | α/β |
Query <-- 1.328 --> IntermediateDALI alignment (Z-score: 28.1 Raw score:2714.30) query 1 slQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED--LALR 58 :::::::::::::::::::::::::::::::::::::::::::::::::::: :::: d1j31a_ 1 --MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESreEVFD 58 query 59 ssFVEA--sRTALRELAARLAeegFGELPVLVGYLDRSEsaqpkygqpaGAPRNAAAVLH 116 :::: :::::::::::: ::::::::::::::: ::::::::::: d1j31a_ 59 --VAQQipeGETTTFLMELAR---ELGLYIVAGTAEKSG----------NYLYNSAVVVG 103 query 117 RGRVALTFAKHHLPnygvFDEFRYFVPGD-TMPIVRLHGVDIALAICEDLWQDgGRVPAA 175 :::::::::::::: ::::::::::: ::::::::::::::::::::::: :::::: d1j31a_ 104 PRGYIGKYRKIHLF----YREKVFFEPGDlGFKVFDIGFAKVGVMICFDWFFP-ESARTL 158 query 176 RSAGAGLLLSVNASPYErdkddTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVV 235 ::::::::::::::::: :::::::::::::::::::::::::::::::::::::: d1j31a_ 159 ALKGAEIIAHPANLVMP-----YAPRAMPIRALENRVYTITADRVGEERGLKFIGKSLIA 213 query 236 DRDGEVVARAPQFSEGCVVLDLDLPaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::::::::::::::: d1j31a_ 214 SPKAEVLSIASETEEEIGVVEIDLN----------------------------------- 238 query 296 ggyadrldadeevysalvvglrayvakngfrsvliglsggidsalvaaiacdalgaqnvy 355 d1j31a_ 239 ------------------------------------------------------------ 239 query 356 gvsmpskyssdhskgdaaelarrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrg 415 d1j31a_ 239 ------------------------------------------------------------ 239 query 416 ttlmaisnqeghivlapgnkselavgystlygdsvgaygpikdvyktsifrlaewrnraa 475 d1j31a_ 239 ------------------------------------------------------------ 239 query 476 aergqtppipeasitkpdypvldailelyvdrdtgadaivaagydrelvvktlrmvdtae 535 d1j31a_ 239 ------------------------------------------------------------ 239 query 536 ykrrqyppgtkisakgfgkdrrlpitnrwregh 568 d1j31a_ 239 ---------larnkrlndmndifkdrreeyyfr 262 FAST alignment (Normalized score: 14.79 Raw score:5705.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPV--EDLALR 58 :::::::::::::::::::::::::::::::::::::::::::::::::: :::: d1j31a_ 1 --MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEV-- 56 query 59 SSFV---------EASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA-GAP 108 ::::::::::::: ::::::::::::: ::: d1j31a_ 57 ----FDVAQQIPEGETTTFLMELARE------LGLYIVAGTAEKS-----------GNYL 95 query 109 RNAAAVLHR--GRVALTFAKHHLPNYGV-FDEFRYFVPGD-TMPIVRLHGVDIALAICED 164 ::::::: :::::::::::: ::::::::::: ::::::::::::::::::: d1j31a_ 96 YNSAVVV--GPRGYIGKYRKIHL-----FYREKVFFEPGDLGFKVFDIGFAKVGVMICFD 148 query 165 LWQDGGRVPAARSAGAGLLLSVNASPYERDKD-DTRLELVRKRAQEAGCTTAYLAMIGGQ 223 :::: ::::::::::::::::::::: ::::::::::::::::::::::::::: d1j31a_ 149 WFFP-ESARTLALKGAEIIAHPANLV------MPYAPRAMPIRALENRVYTITADRVGEE 201 query 224 DELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVIS 283 ::::::::::::::::::::::::::::::::::: d1j31a_ 202 RGLKFIGKSLIASPKAEVLSIASETEEEIGVVEID------------------------- 236 query 284 EEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAA 343 d1j31a_ 237 ------------------------------------------------------------ 237 query 344 IACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTG 403 d1j31a_ 237 ------------------------------------------------------------ 237 query 404 LAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTS 463 d1j31a_ 237 ------------------------------------------------------------ 237 query 464 IFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDREL 523 d1j31a_ 237 ------------------------------------------------------------ 237 query 524 VVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH--------------- 568 d1j31a_ 237 ---------------------------------------------LNLARNKRLNDMNDI 251 query 569 ----------- 569 d1j31a_ 252 FKDRREEYYFR 262 TMalign alignment (TM-score: 0.39 Raw score:223.49) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: d1j31a_ 1 --MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFD 58 query 61 FVEAS-RTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGR 119 ::::: ::::::::::::: :: ::::::::::::: :::::::::::::: d1j31a_ 59 VAQQIPEGETTTFLMELAR-EL-GLYIVAGTAEKSG----------NYLYNSAVVVGPRG 106 query 120 VALTFAKHHLPNYGVFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQDGGRVPAARSA 178 ::::::::::: :::::::::: ::::::::::::::::::::::::: :::::::: d1j31a_ 107 YIGKYRKIHLF----YREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPE-SARTLALK 161 query 179 GAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRD 238 :::::::::::::: ::::::::::::::::::::::::::::::::::::::::: d1j31a_ 162 GAEIIAHPANLVMP-----YAPRAMPIRALENRVYTITADRVGEERGLKFIGKSLIASPK 216 query 239 GEVVARAPQFSEGCVVLDLDLP-AAE--------------AEPPTGVVD-----DGLRID 278 :::::::::::::::::::::: ::: : d1j31a_ 217 AEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRR--------EEYYFR------ 262 query 279 RLVISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS 338 d1j31a_ 263 ------------------------------------------------------------ 263 query 339 ALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMAS 398 d1j31a_ 263 ------------------------------------------------------------ 263 query 399 LGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKD 458 d1j31a_ 263 ------------------------------------------------------------ 263 query 459 VYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAG 518 d1j31a_ 263 ------------------------------------------------------------ 263 query 519 YDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1j31a_ 263 -------------------------------------------------- 263 HHsearch alignment (Probability: 1.00 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVE 63 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: d1j31a_ 2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61 query 64 A-----SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG 118 : ::::::::::: :::::::::::::: ::::::::::::: d1j31a_ 62 QIPEGETTTFLMELARE------LGLYIVAGTAEKSG----------NYLYNSAVVVGPR 105 query 119 RVALTFAKHHLPNYGVFDEFRYFVPGDT-MPIVRLHGVDIALAICEDLWQDGGRVPAARS 177 :::::::::::: :::::::::::: ::::::::::::::::::::::: ::::::: d1j31a_ 106 GYIGKYRKIHLF----YREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPE-SARTLAL 160 query 178 AGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDR 237 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::: d1j31a_ 161 KGAEIIAHPANLV-----MPYAPRAMPIRALENRVYTITADRVGEERGLKFIGKSLIASP 215 query 238 DGEVVARAPQFSEGCVVLDLDLPAAEAEPP--TGVVDDGLRID 278 :::::::::::::::::::::::::::::: ::::::::::: d1j31a_ 216 KAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRREE 258
Intermediate <-- 0.706 --> HitDALI alignment (Z-score: 1.4 Raw score:248.30) d1j31a_ 1 --MVKVGYI--------------------------------------QMEPkileldkNY 20 ::::::: :::: :: d1uuya_ 1 gpEYKVAILtvsdtvsagagpdrsgpravsvvdssseklggakvvatAVVP------dEV 54 d1j31a_ 21 SKAEKLIKEAS-KEGAKLVVLPELfdtgynfesreevfdVAQQipegetTTFLMELAR-- 77 ::::::::::: :::::::::::: :::: ::::::::: d1uuya_ 55 ERIKDILQKWSdVDEMDLILTLGG-------------tgFTPR---dvtPEATKKVIEre 98 d1j31a_ 78 ----------------------------eLGLYIVAGtaeksgnylynsavvvgprgyig 109 :::::::: d1uuya_ 99 tpgllfvmmqeslkitpfamlarsaagirGSTLIINM----------------------- 135 d1j31a_ 110 kyrkihlfyrekvffepgdlgfkvfdigfakvgvmICFDWffpesartlalkGAEIiahp 169 ::::: :::: d1uuya_ 136 ----------------------------------pGNPNA---vaecmeallPALK---- 154 d1j31a_ 170 anlvmpyaprampiralenrvytitadrvgeerglkfigksliaspkaevlsiaseteee 229 d1uuya_ 155 ------------------------------------------------------------ 155 d1j31a_ 230 igvveidlnlarnkrlndmndifkdrreeyyfr 262 d1uuya_ 155 --------------------------halkqik 161 FAST alignment (Normalized score: 2.03 Raw score:417.30) d1j31a_ 1 --MVKVGYI-------------------------------------QMEPKILELDKNYS 21 ::::::: :::: ::::::::: d1uuya_ 1 GPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVV-PDEVERIKD 59 d1j31a_ 22 KAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEG---------ETTTFL 72 ::::::: :::::::::: :::::: d1uuya_ 60 ILQKWSD---VDEMDLILTL-------------------------GGTGFTPRDVTPEAT 91 d1j31a_ 73 MELARE---------------------------------LGLYIVAGTAEKSGNYLYNSA 99 ::: ::::::: d1uuya_ 92 KKV---IERETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIIN-------------- 134 d1j31a_ 100 VVVGPRGYIGKYRKIHLFYREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPESARTLA 159 d1uuya_ 135 ------------------------------------------------------------ 135 d1j31a_ 160 LKGAEIIAHPANLVMPY---APRAMPIRALENRVYTITADRVGEERGLKFIGKSLIASPK 216 ::::::::::: d1uuya_ 135 -----------------MPGNPNAVAECMEA----------------------------- 148 d1j31a_ 217 AEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRREEYYFR------------- 262 d1uuya_ 149 ----------------------------------------------LLPALKHALKQIK 161 TMalign alignment (TM-score: 0.29 Raw score:75.26) d1j31a_ 1 -MVKVGYIQMEPKILELDK--N---YSKA---EKL-----------IKEASKEGAKLVVL 40 ::::::::::::::::: : : : :::::: d1uuya_ 1 G-PEYKVAILTVSDTVSAGAGPDRS---GPRA--VSVVDSSSEKLG--------GAKVVA 46 d1j31a_ 41 PELFDTGYNFESREEVFDVAQQIPEGETTTFLMELARELGLY-IVAGTAEKSGNYLYNSA 99 : ::: ::: : : :::::::::::::::: ::::::::: ::::::: d1uuya_ 47 T--AVV------------PDE-V-E-RIKDILQKWSDVDEMDLILTLGGTGF-TPRDVTP 88 d1j31a_ 100 -VVVGPRGYIG-K-Y--R--KI--HL-FY-REK-VFFEPGDLGFKVFDIGFAKVGVMICF 147 ::: :::: : : : :: :: :: : :::: ::::::::: :::::: d1uuya_ 89 EATK---KVIERETPGLLFVMMQESLKITP--FA---MLAR--SAAGIRGST-LIINMP- 136 d1j31a_ 148 DWFFPESARTLALKGAEIIAHPANLVMPYAPRAMPIRALENRVYTITADRVGEERGLKFI 207 :::::: ::: :: :::: :: d1uuya_ 137 ---------------------GNPNAV-AEC-ME-ALLP---AL---------------- 153 d1j31a_ 208 GKSLIASP-KAEVLSIASETEEEIGVVEIDLN-LARNKRLNDMNDIFKDRREEYYFR 262 :: :::: d1uuya_ 154 ------KHA-------------------LKQIK------------------------ 161 HHsearch alignment (Probability: 0.29 E-value:0.01) d1j31a_ 2 VKVGYIQMEPK---ILELDKNYSKAEKLIKEASK--EGAKLVVLPELFDTGYNFESREEV 56 ::::::::::: :::::::::::::::::::: ::::::::: :::::::: d1uuya_ 4 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATA------VVPDEVER- 56 d1j31a_ 57 FDVAQQIPEGETTTFLMELA--RELGLYIVAG-TAEKSGNYLYNSAVVVGPR---GYIGK 110 ::::::::: :::::::::: ::::::::::::::::::: ::::: d1uuya_ 57 -----------IKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIERETPGLLFV 105 d1j31a_ 111 YRKIHLFYREKVFFEPG----DLGFKVFDIGFAKVGVMICFDWFFPESARTLA 159 ::::::::::::::::: :::::::::::::::::::::::::::::::: d1uuya_ 106 MMQESLKITPFAMLARSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALK 158