Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ni5a1 | Putative cell cycle protein MesJ, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1vlja_ | NADH-dependent butanol dehydrogenase A (TM0820) | Dehydroquinate synthase-like | Dehydroquinate synthase-like | multi |
Query <-- 1.453 --> IntermediateDALI alignment (Z-score: 13.9 Raw score:1146.20) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 rldadeevysALVVGLRAYVAknGFRSVLIGLSGGIDSALVAAIACDALG---aQNVYGV 357 ::::::::::: ::::::::::::::::::::::::::: :::::: d1ni5a1 1 ----------SMTLTLNRQLL--TSRQILVAFSGGLDSTVLLHQLVQWRTenpgVALRAI 48 query 358 SMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEpmFDAYMaslgltglAEEN-LQSRLR 414 ::::::: ::::::::::::::::::::::::: ::::: :::: :::::: d1ni5a1 49 HVHHGLSanADAWVTHCENVCQQWQVPLVVERVQ--LAQEG--------LGIEaQARQAR 98 query 415 GTTLMAISNqEGHIVLAPGNKSELAVG-----------------ystlygdsvgAYGPIK 457 ::::::::: ::::::::::::::::: :::::: d1ni5a1 99 YQAFARTLL-PGEVLVTAQHLDDQCETfllalkrgsgpaglsamaevsefagtrLIRPLL 157 query 458 DVYKTSIFRLAEWRNraaaergqtppIPEAS------------------------itkPD 493 ::::::::::::::: ::::: :: d1ni5a1 158 ARTRGELVQWARQYD-----------LRWIEdesnqddsydrnflrlrvvpllqqrwpHF 206 query 494 YPVLDAIlELYVdRDTGadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfg 553 ::::::: :::: :::: d1ni5a1 207 AEATARSaALCA-EQES------------------------------------------- 222 query 554 kdrrlpitnrwregh 568 d1ni5a1 223 ----------lldel 227 FAST alignment (Normalized score: 6.05 Raw score:2174.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSA-LVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------- 352 ::::::::: :::::::::::::::::::::::::: d1ni5a1 1 -----------SMTLTLNRQL--LTSRQILVAFSGGLDSTVLLHQLVQW----RTENPGV 43 query 353 NVYGVSMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE---- 406 :::::::::::: :::::::::::::::::::::::: d1ni5a1 44 ALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV------------------QLAQ 85 query 407 -----ENLQSRLRGTTLMAISNQ--EGHIVLAPGNKSELAVGYSTLYGDSVG-------- 451 ::::::::::::::: ::::::::::::::: d1ni5a1 86 EGLGIEAQARQARYQAFART---LLPGEVLVTAQHLDDQC------------ETFLLALK 130 query 452 ---------------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASIT 490 ::::::::::::::::::: d1ni5a1 131 RGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQ-------------------- 170 query 491 KP-----------------------------------DYPVLDAILELYVDRDTGADAIV 515 :::::::::::::: d1ni5a1 171 --YDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE--------- 219 query 516 AAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------- 568 d1ni5a1 220 -----------------------------------------------------QESLLDE 226 query 569 - 569 d1ni5a1 227 L 227 TMalign alignment (TM-score: 0.28 Raw score:157.99) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--A-QNVYGV 357 ::::::::::: : :::::::::::::::::::::::::: : :::::: d1ni5a1 1 ----------SMTLTLNRQLL-T-SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAI 48 query 358 SMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEE-NLQSRLR 414 ::::::: ::::::::::::::::::::::::: : : ::: ::: ::::::: d1ni5a1 49 HVHHGLSANADAWVTHCENVCQQWQVPLVVERVQ--L---A----QEG-LGIEAQARQAR 98 query 415 GTTLMAISNQEGHIVLAPGNKSELAVG-YS-----------------TLYGDS-V---GA 452 :::::::: :::::::::::::::::: :: : : :: d1ni5a1 99 YQAFARTL-LPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV-----SEFAGTRL 152 query 453 YGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK-------------PD-YPVLD 498 :::::::::::::::::::: : :::::: :: ::::: d1ni5a1 153 IRPLLARTRGELVQWARQYD-----------L-RWIEDESNQDDSYDRNFLRLRVVPLLQ 200 query 499 AILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRL 558 :::::::: : : ::::::::: d1ni5a1 201 QRWPHFAE-A----------------------T------------------ARSAALCAE 219 query 559 P-------ITNRWREGH 568 : d1ni5a1 220 QESLLDEL--------- 227 HHsearch alignment (Probability: 0.96 E-value:0.00) query 326 RSVLIGLSGGIDSALVAAIACDALGAQ---NVYGVSMPSKYSS--DHSKGDAAELARRTG 380 ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::: d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 query 381 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLA--------- 431 ::::::::: ::::::::::::::::::::::::::::::::: d1ni5a1 74 VPLVVERVQ---------LAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 query 432 ------PGNKSELAVGYSTLYGDSVGAYG-PIKDVYKTSIFRLAEWRN 472 ::::::::::::::::::::::: :::::::::::::::::: d1ni5a1 125 FLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYD 172
Intermediate <-- 0.705 --> HitDALI alignment (Z-score: 4.4 Raw score:402.50) d1ni5a1 1 -------------------SMTLTLNRQLL--TSRQILVAFSGGLD-stVLLHQLVQWRT 38 ::::::::::: :::::::::::::: ::::::::::: d1vlja_ 1 hhhmenfvfhnptkivfgrGTIPKIGEEIKnaGIRKVLFLYGGGSIkknGVYDQVVDSLK 60 d1ni5a1 39 ENpGVALRAIHVhhglsanadawvthcenvcqqwqvplvvervqlaqeglgieaqARQAR 98 :: ::::::::: ::::: d1vlja_ 61 KH-GIEWVEVSG---------------------------------------vkpnPVLSK 80 d1ni5a1 99 YQAFARTL--LPGEVLVTAQHlddqcetfllalkrgsgpaglsamaevsEFAG------- 149 :::::::: ::::::::::: :::: d1vlja_ 81 VHEAVEVAkkEKVEAVLGVGG-----------------gsvvdsakavaAGALyegdiwd 123 d1ni5a1 150 -----------TRLIRPL------------------------------------LARTrg 162 ::::::: :::: d1vlja_ 124 afigkyqiekaLPIFDVLtisatgtemngnavitnektkekygvsskalypkvsIIDP-- 181 d1ni5a1 163 ELVQ-------------------------------------------------------- 166 :::: d1vlja_ 182 SVQFtlpkeqtvygavdaishileyyfdgsspeisneiaegtirtimkmterliekpddy 241 d1ni5a1 167 ------------------------------------------------------------ 167 d1vlja_ 242 earanlawsatialngtmavgrrggewachriehslsalydiahgaglaivfpawmkyvy 301 d1ni5a1 167 ------------------------------------warqydlrwiedesnqddsydrnf 190 d1vlja_ 302 rknpaqferfakkifgfegegeelilkgieafknwlkkvgapvslkdagipeedidkivd 361 d1ni5a1 191 lrlrvvpllqqrwphfaeatarsaalcaeqeslldel 227 d1vlja_ 362 nvmllveknlkpkgaslgrimvleredvreilklaak 398 FAST alignment (Normalized score: 1.87 Raw score:561.90) d1ni5a1 1 SMTLTLNRQLLTSRQILVAFSGG-------------------LDSTVLLHQLVQWRTENP 41 :::::::::::: d1vlja_ 1 -----------------------HHHMENFVFHNPTKIVFGRGTIPKIGEEIKN------ 31 d1ni5a1 42 GVA---LRAIHVHHGLSANA-----DAWVTHCENVCQQWQVPLVVERVQLAQEGLGI--- 90 ::::::::: ::::::::::::::::::::: d1vlja_ 32 ---AGIRKVLFLYGG-----GSIKKNGVYDQVVDSLKKHGIEWVEV-----------SGV 72 d1ni5a1 91 ----EAQARQARYQAFARTLLP-------------------------------------- 108 :::::::::::::: d1vlja_ 73 KPNPVLSKVHEAVEVAKK----EKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGK 128 d1ni5a1 109 -----GEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGE 163 :::::: d1vlja_ 129 YQIEKALPIFD------------------------------------------------- 139 d1ni5a1 164 LVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWP------------------- 204 d1vlja_ 140 -----------------------------------------VLTISATGTEMNGNAVITN 158 d1ni5a1 205 -------------------------------------------------------HFAEA 209 ::::: d1vlja_ 159 EKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNE 218 d1ni5a1 210 TARSAALCAEQESLLDEL------------------------------------------ 227 :::::::::::::::: d1vlja_ 219 IAEGTIRTIMKMTERL--IEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHS 276 d1ni5a1 228 ------------------------------------------------------------ 228 d1vlja_ 277 LSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNW 336 d1ni5a1 228 ------------------------------------------------------------ 228 d1vlja_ 337 LKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLA 396 d1ni5a1 228 -- 228 d1vlja_ 397 AK 398 TMalign alignment (TM-score: 0.45 Raw score:101.34) d1ni5a1 1 -------------------SMTLTLNRQLL-T-SRQILVAF-SGGLDSTVLLHQLVQWRT 38 ::::::::::: : :::::::: :::::::::::::::::: d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLK 60 d1ni5a1 39 ENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQAR 98 ::: :::::::::: :: ::::: d1vlja_ 61 KHG-IEWVEVSGVK-------------------------------------PN--PVLSK 80 d1ni5a1 99 YQAFARTL--LPGEVLVTAQHLDDQCE-TFLLALKRGSGPAGLSAM-AEVS-EF-AG--- 149 :::::::: ::::::::::: : : :: ::: :: :: d1vlja_ 81 VHEAVEVAKKEKVEAVLGVGG--G--SV----------------VDS-AKAVAAGALYEG 119 d1ni5a1 150 ---------------TRLIRPL-------L----------------------------AR 159 ::::::: : :: d1vlja_ 120 DIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSII 179 d1ni5a1 160 TRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVP---------------------- 197 : ::::: : : : : : ::::: :::: d1vlja_ 180 D-PSVQF-T--------L-P-K--E---QTVYG-AVDAISHILEYYFDGSSPEISNEIAE 221 d1ni5a1 198 -----LL--QQRW--------P--HFAEATARSAALCAEQE------------------- 221 :: :::: : ::::::::::::::::: d1vlja_ 222 GTIRTIMKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALY 281 d1ni5a1 222 ------------------------------------------------------------ 222 d1vlja_ 282 DIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVG 341 d1ni5a1 222 ---------------------------------------------------------SLL 224 d1vlja_ 342 APVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK--- 398 d1ni5a1 225 DEL 227 d1vlja_ 399 --- 399 HHsearch alignment (Probability: 0.04 E-value:0.22) d1ni5a1 163 ELVQWARQYDLRW 175 ::::::::::::: d1vlja_ 332 AFKNWLKKVGAPV 344