Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ni5a1 | Putative cell cycle protein MesJ, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1qx4a2 | cytochrome b5 reductase | Ferredoxin reductase-like, C-terminal NADP-linked domain | Ferredoxin reductase-like, C-terminal NADP-linked domain | α/β |
Query <-- 1.453 --> IntermediateDALI alignment (Z-score: 13.9 Raw score:1146.20) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 rldadeevysALVVGLRAYVAknGFRSVLIGLSGGIDSALVAAIACDALG---aQNVYGV 357 ::::::::::: ::::::::::::::::::::::::::: :::::: d1ni5a1 1 ----------SMTLTLNRQLL--TSRQILVAFSGGLDSTVLLHQLVQWRTenpgVALRAI 48 query 358 SMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEpmFDAYMaslgltglAEEN-LQSRLR 414 ::::::: ::::::::::::::::::::::::: ::::: :::: :::::: d1ni5a1 49 HVHHGLSanADAWVTHCENVCQQWQVPLVVERVQ--LAQEG--------LGIEaQARQAR 98 query 415 GTTLMAISNqEGHIVLAPGNKSELAVG-----------------ystlygdsvgAYGPIK 457 ::::::::: ::::::::::::::::: :::::: d1ni5a1 99 YQAFARTLL-PGEVLVTAQHLDDQCETfllalkrgsgpaglsamaevsefagtrLIRPLL 157 query 458 DVYKTSIFRLAEWRNraaaergqtppIPEAS------------------------itkPD 493 ::::::::::::::: ::::: :: d1ni5a1 158 ARTRGELVQWARQYD-----------LRWIEdesnqddsydrnflrlrvvpllqqrwpHF 206 query 494 YPVLDAIlELYVdRDTGadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfg 553 ::::::: :::: :::: d1ni5a1 207 AEATARSaALCA-EQES------------------------------------------- 222 query 554 kdrrlpitnrwregh 568 d1ni5a1 223 ----------lldel 227 FAST alignment (Normalized score: 6.05 Raw score:2174.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSA-LVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------- 352 ::::::::: :::::::::::::::::::::::::: d1ni5a1 1 -----------SMTLTLNRQL--LTSRQILVAFSGGLDSTVLLHQLVQW----RTENPGV 43 query 353 NVYGVSMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE---- 406 :::::::::::: :::::::::::::::::::::::: d1ni5a1 44 ALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV------------------QLAQ 85 query 407 -----ENLQSRLRGTTLMAISNQ--EGHIVLAPGNKSELAVGYSTLYGDSVG-------- 451 ::::::::::::::: ::::::::::::::: d1ni5a1 86 EGLGIEAQARQARYQAFART---LLPGEVLVTAQHLDDQC------------ETFLLALK 130 query 452 ---------------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASIT 490 ::::::::::::::::::: d1ni5a1 131 RGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQ-------------------- 170 query 491 KP-----------------------------------DYPVLDAILELYVDRDTGADAIV 515 :::::::::::::: d1ni5a1 171 --YDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE--------- 219 query 516 AAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------- 568 d1ni5a1 220 -----------------------------------------------------QESLLDE 226 query 569 - 569 d1ni5a1 227 L 227 TMalign alignment (TM-score: 0.28 Raw score:157.99) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--A-QNVYGV 357 ::::::::::: : :::::::::::::::::::::::::: : :::::: d1ni5a1 1 ----------SMTLTLNRQLL-T-SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAI 48 query 358 SMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEE-NLQSRLR 414 ::::::: ::::::::::::::::::::::::: : : ::: ::: ::::::: d1ni5a1 49 HVHHGLSANADAWVTHCENVCQQWQVPLVVERVQ--L---A----QEG-LGIEAQARQAR 98 query 415 GTTLMAISNQEGHIVLAPGNKSELAVG-YS-----------------TLYGDS-V---GA 452 :::::::: :::::::::::::::::: :: : : :: d1ni5a1 99 YQAFARTL-LPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV-----SEFAGTRL 152 query 453 YGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK-------------PD-YPVLD 498 :::::::::::::::::::: : :::::: :: ::::: d1ni5a1 153 IRPLLARTRGELVQWARQYD-----------L-RWIEDESNQDDSYDRNFLRLRVVPLLQ 200 query 499 AILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRL 558 :::::::: : : ::::::::: d1ni5a1 201 QRWPHFAE-A----------------------T------------------ARSAALCAE 219 query 559 P-------ITNRWREGH 568 : d1ni5a1 220 QESLLDEL--------- 227 HHsearch alignment (Probability: 0.96 E-value:0.00) query 326 RSVLIGLSGGIDSALVAAIACDALGAQ---NVYGVSMPSKYSS--DHSKGDAAELARRTG 380 ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::: d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 query 381 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLA--------- 431 ::::::::: ::::::::::::::::::::::::::::::::: d1ni5a1 74 VPLVVERVQ---------LAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 query 432 ------PGNKSELAVGYSTLYGDSVGAYG-PIKDVYKTSIFRLAEWRN 472 ::::::::::::::::::::::: :::::::::::::::::: d1ni5a1 125 FLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYD 172
Intermediate <-- 1.264 --> HitDALI alignment (Z-score: 5.7 Raw score:444.40) d1ni5a1 1 smtltlnrQLLT------------SRQILVAFSGGldSTVLLHQLVQWRTEN--PGVALR 46 :::: ::::::::::: ::::::::::::::: :::::: d1qx4a2 1 -------gKFAIradkksnpvvrtVKSVGMIAGGT--GITPMLQVIRAVLKDpnDHTVCY 51 d1ni5a1 47 AIHVhhglsanADAWVtHCENVCQQWQ------VPLVV----------ERVQlaqeglgi 90 :::: ::::: :::::::::: ::::: :::: d1qx4a2 52 LLFA-----nqSEKDI-LLRPELEELRnehssrFKLWYtvdkapdawdYSQG-------- 97 d1ni5a1 91 eaqarqaRYQAFART-LLPG--EVLVTAQHLddqcetfllalkrgsgpaglsamaevsEF 147 :::::::: :::: ::::::::: :: d1qx4a2 98 -----fvNEEMIRDHlPPPGeeTLILMCGPP----------------pmiqfaclpnlER 136 d1ni5a1 148 AGT---RLIRPllartrgelvqwarqydlrwiedesnqddsydrnflrlrvvpllqqrwp 204 ::: ::::: d1qx4a2 137 VGHpkeRCFTF------------------------------------------------- 147 d1ni5a1 205 hfaeatarsaalcaeqeslldel 227 d1qx4a2 148 ----------------------- 148 FAST alignment (Normalized score: 3.57 Raw score:652.50) d1ni5a1 1 SMTLTLNRQL---------------LTSRQILVAFSG---GLDSTVLLHQLVQWRTEN-- 40 ::::::::::: ::::::::::::: d1qx4a2 1 ----------GKFAIRADKKSNPVVRTVKSVGMIAG-GTGITPMLQVIRAVLK-----DP 44 d1ni5a1 41 -PGVALRAIHVHHGLSANADA--------WVTHCENVCQQW---QVPLVVERVQLAQEGL 88 :::::::::: ::::::::::: :::::::: d1qx4a2 45 NDHTVCYLLFA----------NQSEKDILLRPELEELRNE-HSSRFKLWYTV-------- 85 d1ni5a1 89 GIEAQARQA--------------RYQAFARTLL---PGEVLVTAQHLDDQCETFLLALKR 131 :::::::::: ::::::: d1qx4a2 86 ---------DKAPDAWDYSQGFVNEEMIRDHLPPPGEETLILM----------------- 119 d1ni5a1 132 GSGPAGLSAMAEVSE----------------FAGTRLIRPLLARTRGELVQWARQYDLRW 175 :::: d1qx4a2 120 ---------------CGPPPMIQFACLPNLERVGH------------------------- 139 d1ni5a1 176 IEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDEL-------- 227 d1qx4a2 140 ----------------------------------------------------PKERCFTF 147 TMalign alignment (TM-score: 0.36 Raw score:80.87) d1ni5a1 1 --SMTLTLNRQ-------LLTSR-QILVAFSGGLDSTVLLHQLVQWRTE-NPGVALRAIH 49 :::: ::::: ::::::: ::::::::::::::::: ::::::::: d1qx4a2 1 GK-----FAIRADKKSNPVVRTVKSVGMIAG-GTGITPMLQVIRAVLKDP-NDHTVCYLL 53 d1ni5a1 50 VHHGLSANADAWVTHCENVCQQWQ--VPLVVE----------RVQLAQEGLGIEAQARQA 97 :::: ::::::::::::::::: : :::::: ::: :: d1qx4a2 54 FANQ-SEKDILLRPELEELRNE-HSSRFKLWYTVDKAPDAWDYSQ-----------GF-- 98 d1ni5a1 98 RY-QAFARTLLP-G--EVLVTAQHLDDQ-CET--FLLALKRGSGPAGLSAMA--EVSEFA 148 :: ::::::::: : ::::::: ::: :: :: :::: d1qx4a2 99 VNEEMIRDHLPPPGEETLILMCG--PPPM-IQFA----------------CLPN--LERV 137 d1ni5a1 149 GTRL--IRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHF 206 :::: :::: d1qx4a2 138 GHPKERCFTF-------------------------------------------------- 147 d1ni5a1 207 AEATARSAALCAEQESLLDEL 227 d1qx4a2 148 --------------------- 148 HHsearch alignment (Probability: 0.25 E-value:0.03) d1ni5a1 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTE-NPGVALRAIHVHHGLSANADAWVTHCENV 68 :::::::::::::::::::::::::::::: :::::::::::::: ::::::::::::: d1qx4a2 14 VVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQS--EKDILLRPELEEL 71 d1ni5a1 69 CQQWQVPLVVERV 81 ::::::::::::: d1qx4a2 72 RNEHSSRFKLWYT 84