Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1emsa2 | NIT-FHIT fusion protein, N-terminal domain | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase | α+β |
| Hit | d1hp1a2 | 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.501 --> IntermediateDALI alignment (Z-score: 25.8 Raw score:2601.40) query 1 --SLQLRLALNQIDSTvGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGyPVED-LAL 57 :::::::::::::: :::::::::::::::::::::::::::::::::: :::: ::: d1emsa2 1 maTGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKnEQI 58 query 58 RssFVEASR-TALRELAARLAeegFGELPVLV-GYLDRSEsaqpkygqPAGA-PRNAAAV 114 : :::::: ::::::::::: :::::::: ::::::: :::: ::::::: d1emsa2 59 D--LAMATDcEYMEKYRELAR---KHNIWLSLgGLHHKDP--------SDAAhPWNTHLI 105 query 115 LH-RGRVALTFAKHHLPNY-----gvFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQ 167 :: :::::::::::::::: :::::::::: ::::::::::::::::::::::: d1emsa2 106 IDsDGVTRAEYNKLHLFDLeipgkvrLMESEFSKAGtEMIPPVDTPIGRLGLSICYDVRF 165 query 168 DGgRVPAARSAGAGLLLSVNASPYErdkdDTRLELVRKRAQEAGCTTAYLAMIGG-QDEL 226 :: :::::::::::::::::::::: :::::::::::::::::::::::::: :::: d1emsa2 166 PE-LSLWNRKRGAQLLSFPSAFTLN-tglAHWETLLRARAIENQCYVVAAAQTGAhNPKR 223 query 227 VFDGDSIVVDRDGEVVARAPQfSEGCVVLDLDLPaaeaepptgvvddglridrlviseep 286 ::::::::::::::::::::: :::::::::::: d1emsa2 224 QSYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLS-------------------------- 256 query 287 lpayeaelaggyadrldadeevysalvvglrayvakngfrsvliglsggidsalvaaiac 346 d1emsa2 257 ------------------------------------------------------------ 257 query 347 dalgaqnvygvsmpskyssdhskgdaaelarrtglnfrtvsiepmfdaymaslgltglae 406 d1emsa2 257 ------------------------------------------------------------ 257 query 407 enlqsrlrgttlmaisnqeghivlapgnkselavgystlygdsvgaygpikdvyktsifr 466 d1emsa2 257 ------------------------------------------------------------ 257 query 467 laewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaagydrelvvk 526 d1emsa2 257 ------------------------------------------------------------ 257 query 527 tlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 568 d1emsa2 257 ---------------------------yvdtlremqpvfshr 271 FAST alignment (Normalized score: 13.47 Raw score:5286.00) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL- 57 ::::::::::::: ::::::::::::::::::::::::::::::::: d1emsa2 1 MATGRHFIAVCQMTS-DNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD----------F 49 query 58 -------RSSFVEASR-TALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPA--- 105 ::::::::: :::::::::::: ::::::: ::::::: d1emsa2 50 IGLNKNEQIDLAMATDCEYMEKYRELARK---HNIWLSLGGLHHKDP----------SDA 96 query 106 GAPRNAAAVL-HRGRVALTFAKHHLPNYGV---------FDEFRYFVPGDTM-PIVRLHG 154 :::::::::: ::::::::::::::: ::::::::::::: ::::: d1emsa2 97 AHPWNTHLIIDSDGVTRAEYNKLHLF----DLEIPGKVRLMESEFSKAGTEMIPPVDT-- 150 query 155 --VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD-----DTRLELVRKRA 207 :::::::::::::: ::::::::::::::::::::: ::::::::::: d1emsa2 151 PIGRLGLSICYDVRFP-ELSLWNRKRGAQLLSFPSAFT------LNTGLAHWETLLRARA 203 query 208 QEAGCTTAYLAMIGG-QDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEP 266 ::::::::::::::: :::::::::::::::::::::::: ::::::::::: d1emsa2 204 IENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEID-------- 254 query 267 PTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFR 326 d1emsa2 255 ------------------------------------------------------------ 255 query 327 SVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTV 386 d1emsa2 255 ------------------------------------------------------------ 255 query 387 SIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLY 446 d1emsa2 255 ------------------------------------------------------------ 255 query 447 GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVD 506 d1emsa2 255 ------------------------------------------------------------ 255 query 507 RDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWRE 566 d1emsa2 255 ------------------------------------------------------------ 255 query 567 GH----------------- 568 d1emsa2 255 --LSYVDTLREMQPVFSHR 271 TMalign alignment (TM-score: 0.40 Raw score:226.65) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR 58 :::::::::::::: :::::::::::::::::::::::::::::::::: :::::::: d1emsa2 1 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKNEQI 58 query 59 SSFVEASRTALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPAG-APRNAAAVLH 116 ::::::::::::::::::: :: :::::: :::::::: :: :::::::::: d1emsa2 59 -DLAMATDCEYMEKYRELAR-KH-NIWLSLGGLHHKDPS--------DAAHPWNTHLIID 107 query 117 -RGRVALTFAKHHLPNY-----GVFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQDG 169 :::::::::::::::: :::::::::::: ::::::::::::::::::::::::: d1emsa2 108 SDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE 167 query 170 GRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVF 228 : ::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::: d1emsa2 168 L-SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQS 225 query 229 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE------------AEPPTGVVDDGLR 276 :::::::::::::::::: :::::::::::::::: d1emsa2 226 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSHR------------- 271 query 277 IDRLVISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI 336 d1emsa2 272 ------------------------------------------------------------ 272 query 337 DSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYM 396 d1emsa2 272 ------------------------------------------------------------ 272 query 397 ASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPI 456 d1emsa2 272 ------------------------------------------------------------ 272 query 457 KDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVA 516 d1emsa2 272 ------------------------------------------------------------ 272 query 517 AGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1emsa2 272 ---------------------------------------------------- 272 HHsearch alignment (Probability: 1.00 E-value:0.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: d1emsa2 3 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLA 61 query 61 FVE--ASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVL-HR 117 ::: :::::::::::: ::::::::::::::: ::::::::::::: :: d1emsa2 62 MATDCEYMEKYRELARK------HNIWLSLGGLHHKDP------SDAAHPWNTHLIIDSD 109 query 118 GRVALTFAKHHL-----PNYGVFDEFRYFVPGDTM-PIVRLHGVDIALAICEDLWQDGGR 171 :::::::::::: :::::::::::::::::: :::::::::::::::::::::: : d1emsa2 110 GVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE-L 168 query 172 VPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGG-QDELVFDG 230 ::::::::::::::::::::::: ::::::::::::::::::::::::::: :::::::: d1emsa2 169 SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYG 227 query 231 DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGL 275 ::::::::::::::::: ::::::::::::::::::::::::::: d1emsa2 228 HSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDTLREMQPVFSHR 271
Intermediate <-- 1.219 --> HitDALI alignment (Z-score: 6.1 Raw score:793.00) d1emsa2 1 -matGRHFIAVCQM-TSDNDLE------KNFQAAKNMIERAGEKK----CEMVFLPECfd 48 :::::::::: ::::::: ::::::::::::::::: ::::::::: d1hp1a2 1 yeqdKTYKITVLHTnDHHGHFWrneygeYGLAAQKTLVDGIRKEVaaegGSVLLLSGG-d 59 d1emsa2 49 FIGLNKNEQIDLAMATDcEYMEKYRelarkhniwlSLGG--lhhkdPSDAAHPwnthlii 106 ::::::::::::::::: ::::::: :::: ::::::: d1hp1a2 60 INTGVPESDLQDAEPDF-RGMNLVG---------yDAMAignhefdNPLTVLR------- 102 d1emsa2 107 dsdgvtraeyNKLHLfdleipgkvrlmesefskAGTEmipPVDTPIGRLGLSICY----- 161 ::::: :::: ::::::::::::::: d1hp1a2 103 qqekwakfplLSANI-----------yqkstgeRLFKpwaLFKRQDLKIAVIGLTtddta 151 d1emsa2 162 ---------------DVRF-PELSLWNRK-RGAQLLSFPSAFtlnTGLA---------HW 195 :::: ::::::::: :::::::::::: :::: :: d1hp1a2 152 kignpeyftdiefrkPADEaKLVIQELQQtEKPDIIIAATHM---GHYDngehgsnapGD 208 d1emsa2 196 ETLLRARAIENqcyVVAAAQtgahnpkrQSYGH-----------------smvvdpWGAV 238 ::::::::::: :::::: ::::: :::: d1hp1a2 209 VEMARALPAGS--lAMIVGG-------hSQDPVcmaaenkkqvdyvpgtpckpdqqNGIW 259 d1emsa2 239 ---vaqcseRVDMCFAEIDLSY---------------------------------vdtlr 262 ::::::::::::: d1hp1a2 260 ivqahewgkYVGRADFEFRNGEmkmvnyqlipvnlkkkrvlytpeiaenqqmisllspfq 319 d1emsa2 263 emqpvfshr 271 d1hp1a2 320 nkgkaqlev 328 FAST alignment (Normalized score: 3.53 Raw score:1052.00) d1emsa2 1 MA---TGRHFIAVCQ-MTSDN----------DLEKNFQAAKNMIERAGEKKCEMVFLPEC 46 :::::::::: ::::: :::::::::::::::::::: ::::: d1hp1a2 1 --YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEG-GSVLL--- 54 d1emsa2 47 FD-----FIGLNKN-----EQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDA 96 :::::: :::::::::: d1hp1a2 55 --LSGGDINTGVP-ESDLQDAEPDFRGMN------------------------------- 80 d1emsa2 97 AHPWNTHLIIDSDGVTRAEY--------------------------------NKLHLFDL 124 ::::::: d1hp1a2 81 --------------------LVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQ- 119 d1emsa2 125 EIPGKVRLMESEFSKAGTEMI-----------PPVDTPI---GRLGLSICYDVR------ 164 :::: :::::: d1hp1a2 120 ---------------------KSTGERLFKPWALFK---RQDLKIAVI------GLTTDD 149 d1emsa2 165 ---------------------FPELSLWNRK-RGAQLLSFPSAFTLNTGLA--------- 193 :::::::::: ::::::::::::: d1hp1a2 150 TAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMG------HYDNGEHGS 203 d1emsa2 194 ---HWETLLRARAIENQCY------VVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE 244 :::::::: ::::: d1hp1a2 204 NAPGDVEMARA--------LPAGSLAMIVG------------------------------ 225 d1emsa2 245 -------------------------------------------RVDMCFAEIDLSYVDTL 261 ::::::::: d1hp1a2 226 GHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEF-------- 277 d1emsa2 262 REMQPVFSHR-------------------------------------------------- 271 d1hp1a2 278 ----------RNGEMKMVNYQLIPVNLKKKRVLYTPEIAENQQMISLLSPFQNKGKAQLE 327 d1emsa2 272 - 272 d1hp1a2 328 V 328 TMalign alignment (TM-score: 0.56 Raw score:151.20) d1emsa2 1 MA--TGRHFIAVCQMTSDNDLEK------NFQAAKNMIERAGEKK----CEMVFLPECFD 48 :: ::::::::::::::::::: :::::::::::::::: :::::::::: d1hp1a2 1 YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGD- 59 d1emsa2 49 FIGLN-KNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLH--HK--DPSDAAHPWNT- 102 ::::: ::::::::::: ::::::: ::::::: :: ::::::::: d1hp1a2 60 INTGVP-ESDLQDAEPDF-RGMNLVG---------YDAMAIGNHEFDN--PLTVLRQQEK 106 d1emsa2 103 HLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMES---EFSKAGTEMIPPVDTPIGRLGLSI 159 :: : :::::::::: : ::::::::::::::::::::: d1hp1a2 107 -WA------K-FPLLSANIYQ-----------KSTG---ERLFKPWALFKRQDLKIAVIG 144 d1emsa2 160 CY--------------------DVRF-PELSLWNRK-RGAQLLSFPSAFTLNT-GLA--- 193 :: :::: ::::::::: :::::::::::::::: ::: d1hp1a2 145 LTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSN 204 d1emsa2 194 --HWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHS------------------MVVD 233 ::::::::::::: ::: ::::: :::::: :::: d1hp1a2 205 APGDVEMARALPAGS-LAM-IVGGH-------SQDPVCMAAENKKQVDYVPGTPCKPDQQ 255 d1emsa2 234 PWGAVVAQCSE---RVDMCFAEIDLSYVD------------------------------- 259 :::: ::::: ::::::::::::::: d1hp1a2 256 -NGIW-IVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKRVLYTPEIAENQQMIS 313 d1emsa2 260 ---------------TLREMQPVFSHR 271 d1hp1a2 314 LLSPFQNKGKAQLEV------------ 328 HHsearch alignment (Probability: 0.09 E-value:0.05) d1emsa2 174 KRGAQLLSFPSAFTLNTGLA 193 :::::::::::::::::::: d1hp1a2 181 TEKPDIIIAATHMGHYDNGE 200