Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1vl2a1 | Argininosuccinate synthetase, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1heta2 | Alcohol dehydrogenase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.669 --> IntermediateDALI alignment (Z-score: 12.4 Raw score:948.50) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1vl2a1 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1vl2a1 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1vl2a1 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1vl2a1 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1vl2a1 1 ------------------------------------------------------------ 1 query 301 rldadeevysalvvglrayvakngFRSVLIGLSGGIDSALVAAIACDALGaqNVYGVSMP 360 :::::::::::::::::::::::::: :::::::: d1vl2a1 1 ------------------------KEKVVLAYSGGLDTSVILKWLCEKGF--DVIAYVAN 34 query 361 SKySSDHsKGDAAELARRTGL-NFRTVSIEPMFDAY-MASLG-------ltGLAEENLQS 411 :: :::: ::::::::::::: :::::::::::::: ::::: ::::::::: d1vl2a1 35 VG-QKDD-FVAIKEKALKTGAsKVYVEDLRREFVTDyIFTALlgnamyegrYLLGTAIAR 92 query 412 RLRGTTLMAISNQEGH-IVLAPGNKselavGYST-lyGDSV--------gAYGPIK---- 457 :::::::::::::::: :::::::: :::: :::: :::::: d1vl2a1 93 PLIAKRQVEIAEKEGAqYVAHGATG-----KGNDqvrFELTyaalnpnlkVISPWKdpef 147 query 458 DVYK-TSIFRLAEWRnraaaergqtPPIPeasitkpdypvldailelyvdrdtgadaiva 516 :::: :::::::::: :::: d1vl2a1 148 LAKFkTDLINYAMEK----------GIPI------------------------------- 166 query 517 agydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 568 d1vl2a1 167 ---------------------------------------------------- 167 FAST alignment (Normalized score: 5.35 Raw score:1644.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1vl2a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1vl2a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1vl2a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1vl2a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1vl2a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGF-RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSM 359 :::::::::::::::::::::: ::: ::::::: d1vl2a1 1 -------------------------KEKVVLAYSGGLDTSVILKWLCE-KGF-DVIAYVA 33 query 360 PS-KYS-SDHSKGDAAELARRTG---LNFRTVSIEPMFD-AYMA---SLGLTGL------ 404 :: ::: :::::::::: ::::::::::::: :::: :::: d1vl2a1 34 NVGQKDDFVAIKEKALK------TGASKVYVEDLRREFVTDYIFTALLGNA---MYEGRY 84 query 405 -AEENLQSRLRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLY------GDSVG----- 451 :::::::::::::::::::::: :::::::::: :::: d1vl2a1 85 LLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGK----------GNDQVRFELT-YAALN 133 query 452 ----AYGPIKDVY----------KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 497 :::: :::::::::: d1vl2a1 134 PNLKVISP-----WKDPEFLAKFKTDLINYAME--------------------------- 161 query 498 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 557 d1vl2a1 162 ------------------------------------------------------------ 162 query 558 LPITNRWREGH----- 568 d1vl2a1 162 -----------KGIPI 166 TMalign alignment (TM-score: 0.23 Raw score:131.95) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1vl2a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1vl2a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1vl2a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1vl2a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1vl2a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMP 360 :::::::::::::::::::::::::: :::::::: d1vl2a1 1 ------------------------KEKVVLAYSGGLDTSVILKWLCEKGF--DVIAYVAN 34 query 361 SKYSSDHSKGDAAELARRTGL-NFRTVSIEPMFDAY-MASLG---LT----GLAEENLQS 411 :: :::: ::::::::::::: :::::::::::::: ::::: :: ::::::::: d1vl2a1 35 VG-QKDD-FVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIAR 92 query 412 RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG--------AYGPIK-D-- 458 :::::::::::::::: :::::::: : :::::::: :: :::::: : d1vl2a1 93 PLIAKRQVEIAEKEGAQYVAHGATG--K---GNDQVRFELTYAALNPNLKVISPWKDPEF 147 query 459 VYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAG 518 :: :::::::::::: : : ::: d1vl2a1 148 LA-KFKTDLINYAME-K------G-IPI-------------------------------- 166 query 519 YDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1vl2a1 167 -------------------------------------------------- 167 HHsearch alignment (Probability: 0.96 E-value:0.00) query 326 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFR 384 ::::::::::::::::::::::: :::::::::: ::::::::::::::::::: ::: d1vl2a1 2 EKVVLAYSGGLDTSVILKWLCEK--GFDVIAYVAN--VGQKDDFVAIKEKALKTGASKVY 57 query 385 TVSIEPMFDAYM--------ASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG--- 433 :::::::::::: ::::::::::::::::::::::::::::::::::::: d1vl2a1 58 VEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 117 query 434 ---NKSELAVGYSTLYGDSVGAYGP-----IKDVYKTSIFRLAEWRN 472 ::::::::::::::: :::::: ::::::::::::::::: d1vl2a1 118 KGNDQVRFELTYAALNPN-LKVISPWKDPEFLAKFKTDLINYAMEKG 163
Intermediate <-- 0.685 --> HitDALI alignment (Z-score: 6.5 Raw score:537.20) d1vl2a1 1 ----------------------------KEKVVLAYSgGLDTSVILKWLCEKGF-DVIAY 31 ::::::::: :::::::::::::::: ::::: d1heta2 1 splekvcligcgfstgygsavkvakvtqGSTCAVFGL-GGVGLSVIMGCKAAGAaRIIGV 59 d1vl2a1 32 VAnvgqkddFVAIKEKALKTGASKVYVEDLRRefvtdyiftallgnamyegryllgtaia 91 :: ::::::::::::::::::::::: d1heta2 60 DI-------NKDKFAKAKEVGATECVNPQDYK---------------------------- 84 d1vl2a1 92 rpliakRQVEIAEKEG---AQYVAHGAtgkgnDQVRFELT--yaalNPNLKVIS------ 140 :::::::::: :::::::: :::::::: :::::::: d1heta2 85 -----kPIQEVLTEMSnggVDFSFEVI-----GRLDTMVTalsccqEAYGVSVIvgvppd 134 d1vl2a1 141 ----------------pwKDPEFLAkfktdlinyamekgipi 166 ::::::: d1heta2 135 sqnlsmnpmlllsgrtwkGAIFGGFkskdsvpklvadfmakk 176 FAST alignment (Normalized score: 6.04 Raw score:1033.00) d1vl2a1 1 ----------------------------KEKVVLAYSGGLDTSVILKWLCEKGF-DVIAY 31 :::::: ::::::::::::::::::: ::::: d1heta2 1 SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAV-FGLGGVGLSVIMGCKAAGAARIIGV 59 d1vl2a1 32 VANVGQKDD-FVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAI 90 : ::::::::::::::::::: d1heta2 60 D--------INKDKFAKAKEVGATECVNP------------------------------- 80 d1vl2a1 91 ARP-----LIAKRQVEIAEKE---GAQYVAHGATG-KGNDQVRFELTYAAL-NPNLKVIS 140 ::::::::: ::::::::: :::::::::::: :::::::: d1heta2 81 ---QDYKKPIQEVLTEM----SNGGVDFSFEVI--GRLDTMVTALSCC---QEAYGVSVI 128 d1vl2a1 141 PWKDPEFLAKF------------------------------------KTDLINYAMEKGI 164 ::::::::: d1heta2 129 -----------VGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFM---- 173 d1vl2a1 165 PI--- 166 d1heta2 174 --AKK 176 TMalign alignment (TM-score: 0.44 Raw score:73.20) d1vl2a1 1 -----------KEKVVLAYSGGL-DTSVILKWLCEKGFD--VIAYVANVGQKD-DFVAIK 45 :: :::::::::: ::: ::::::: ::: : ::: d1heta2 1 SPLEKVCLIGC----------GFSTGYGSAVKVA--KVTQGSTCAVFG--LGGV-G-LSV 44 d1vl2a1 46 EKALKTGAS-KVYVE------------------DLRREF-VTD----------------- 68 ::::::::: ::::: :::::: :: d1heta2 45 IMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYK-KPIQEVLTEMSNGGVDFSF 103 d1vl2a1 69 --YIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFE 126 :: :::::::::::::: ::::::::: :::::: : d1heta2 104 EV-------------------IG--RLDTMVTALSCCQE-AYGVSVIVG---VPPDSQ-N 137 d1vl2a1 127 LTYAAL--NPN--LKVISPWKDPEFLAKFKTDLINYAMEKGIPI 166 :: :: ::: ::::::::: :: ::::::::::::::::: d1heta2 138 LS--MNPMLLLSGRTWKGAIFG--GF-KSKDSVPKLVADFMAKK 176 HHsearch alignment (Probability: 0.10 E-value:0.23) d1vl2a1 2 EKVVLAYSGGLDTSVILKWLCEKGF-DVIAYVANVGQKDDFVAIKEKALKTGASKVYVED 60 ::::::::::::::::: ::::::: ::::::: :::::::::::::::::::: d1heta2 30 STCAVFGLGGVGLSVIM-GCKAAGAARIIGVDI-------NKDKFAKAKEVGATECVNPQ 81 d1vl2a1 61 LRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGAT 116 :::::::::::::: ::::::::::::::::::::::::::::::::::::: d1heta2 82 DYKKPIQEVLTEMS-----NGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 132