Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ru8a_ | Putative N-type ATP pyrophosphatase PF0828 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1a4ma_ | Adenosine deaminase (ADA) | Metallo-dependent hydrolases | TIM beta/alpha-barrel | α/β |
Query <-- 0.937 --> IntermediateDALI alignment (Z-score: 6.9 Raw score:641.00) query 1 dadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALgaqNVYGVSMPSK 60 :::::::::::::::::::::::::: :::::::::: d1ru8a_ 1 ---------------------GLADVAVLYSGGKDSNYALYWAIKNR-fsVKFLVTMVSE 38 query 61 YS-----sDHSKGdAAELARRTGLNFRTVSIEpmfdaymaslgltglaEENLQSRLRGTT 115 :: ::::: :::::::::::::::::: :::::::::::: d1ru8a_ 39 NEesymytINANL-TDLQARALGIPLVKGFTQ---------------gEKEKEVEDLKRV 82 query 116 LMAIsnqEGHIVLAPGnkselavGYSTlyGDSVG------AYGPIKDVYKTSIFRLAEWR 169 :::: ::::::::: :::: ::::: :::::::::::::::::::: d1ru8a_ 83 LSGL---KIQGIVAGA------sKYQRkrIEKVAkelgleVYTPAWGRDAKEYMRELLNL 133 query 170 N------------------------------------raaaergqtppipEASItkpdyp 193 : :::: d1ru8a_ 134 GfkimvvgvsaygldeswlgrildesaleelitlnekykvhvageggefeTFVL------ 187 query 194 vldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkd 253 d1ru8a_ 188 ---------------------------------dmplfkykivvdkakkvwepctssgkl 214 query 254 rrlpitnrwregh 266 d1ru8a_ 215 iieeahleskleh 227 FAST alignment (Normalized score: 5.12 Raw score:1259.00) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQN-----VYGV 55 :::::::::::::::::::::::: :::: d1ru8a_ 1 ---------------------GLADVAVLYSGGKDSNYALYWAIK------NRFSVKFLV 33 query 56 SMPSKYSSDHS--------KGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLA---E 104 ::::::: ::::::::::::::::::: : d1ru8a_ 34 TMVSENE----ESYMYTINANLTDLQARALGIPLVKGF------------------TQGE 71 query 105 ENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLY-----GDSVG---------- 149 :::::::::::::: ::: ::::: :::: d1ru8a_ 72 KEKEVEDLKRVLSG--LKI-QGIVA---------------GASKYQRKR-IEKVAKELGL 112 query 150 -AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP------------------ 190 ::::::::::::::::::: d1ru8a_ 113 EVYTPAWGRDAKEYMRELLN----------------------LGFKIMVVGVSAYGLDES 150 query 191 ------------DYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQ 238 :::::::: d1ru8a_ 151 WLGRILDESALEELITLNEK---------------------------------------- 170 query 239 YPPGTKISAKGFGKDRRLPITNRWREGH-------------------------------- 266 d1ru8a_ 171 ----------------------------YKVHVAGEGGEFETFVLDMPLFKYKIVVDKAK 202 query 267 ------------------------- 267 d1ru8a_ 203 KVWEPCTSSGKLIIEEAHLESKLEH 227 TMalign alignment (TM-score: 0.41 Raw score:109.76) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK 60 ::::::::::::::::::::::::::: ::::::::::: d1ru8a_ 1 ---------------------GLADVAVLYSGGKDSNYALYWAIKNRF-SVKFLVTMVSE 38 query 61 YS-S---DHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTL 116 :: : :::::::::::::::::::::::: : : ::::::::::: d1ru8a_ 39 NEESYMYTINANLTDLQARALGIPLVKGFTQ--G-------------E-KEKEVEDLKRV 82 query 117 MAISNQEGHIVLAPGNKSELAVGYSTL-YGDSV-G------AYGPIKDVYKTSIFRLAEW 168 :::: ::::::::: :: : :: :::: : ::::::::::::::::::: d1ru8a_ 83 LSGL--KIQGIVAGA---SK--Y--QRK-RIEKVAKELGLEVYTPAWGRDAKEYMRELLN 132 query 169 RNRAAAERGQTPPIPEASITK---P-DY----------------PVLDAILELYVDRDTG 208 : : : : :::: : :: ::::: d1ru8a_ 133 L-G----------F-K-IMVVGVSAYGLDESWLGRILDESALEELITLN----------- 168 query 209 ADAIVAAGYDRELV---------------------------------------------- 222 ::: :: d1ru8a_ 169 -------EKY--KVHVAGEGGEFETFVLDMPLFKYKIVVDKAKKVWEPCTSSGKLIIEEA 219 query 223 --------VKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1ru8a_ 220 HLESKLEH-------------------------------------------- 227 HHsearch alignment (Probability: 0.94 E-value:0.00) query 22 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHS----KGDAAELARRT 77 ::::::::::::::::::::::::: ::::::::::::::::::: ::::::::::: d1ru8a_ 1 GLADVAVLYSGGKDSNYALYWAIKN-RFSVKFLVTMVSENEESYMYTINANLTDLQARAL 59 query 78 GLNFRTVSIEPMFDAYMASL 97 :::::::::::::::::::: d1ru8a_ 60 GIPLVKGFTQGEKEKEVEDL 79
Intermediate <-- 0.920 --> HitDALI alignment (Z-score: 1.5 Raw score:238.20) d1ru8a_ 1 -------gladvAVLYSggkdsnyalywaiknrfsvkflVTMV---SENE------ESYM 44 ::::: :::: :::: :::: d1a4ma_ 1 tpafnkpkvelhVHLDG----------------------AIKPetiLYFGkkrgiaLPAD 38 d1ru8a_ 45 Y----tINAN-----ltdLQARalgiplvkgftqgeKEKE-VEDLKRVLSGL----KIQG 90 : :::: :::: :::: ::::::::::: :::: d1a4ma_ 39 TveelrNIIGmdkplslpGFLA---kfdyympviagCREAiKRIAYEFVEMKakegVVYV 95 d1ru8a_ 91 IVAG----------------------aSKYQRKRIEKVAKELG-----LEVYTPA-wgrD 122 :::: :::::::::::::::: ::::::: : d1a4ma_ 96 EVRYsphllanskvdpmpwnqtegdvtPDDVVDLVNQGLQEGEqafgiKVRSILCcmrhQ 155 d1ru8a_ 123 AKEY--------------mrellnlgFKIMvvgvsaygldeswlgrILDEsaleelitln 168 :::: :::: :::: d1a4ma_ 156 PSWSlevlelckkynqktvvamdlagDETI----------------EGSS---------- 189 d1ru8a_ 169 ekykvHVAG--------------------------------------------------- 177 :::: d1a4ma_ 190 ---lfPGHVeayegavkngihrtvhagevgspevvreavdilktervghgyhtiedealy 246 d1ru8a_ 178 -----------------------------------------------------eggefet 184 d1a4ma_ 247 nrllkenmhfevcpwssyltgawdpktthavvrfkndkanyslntddplifkstldtdyq 306 d1ru8a_ 185 fvldmplfkykivvdkakkvwepctssgkliieeahleskleh 227 d1a4ma_ 307 mtkkdmgfteeefkrlninaakssflpeeekkellerlyreyq 349 FAST alignment (Normalized score: 1.05 Raw score:294.40) d1ru8a_ 1 GLADVAVLYSG------------------------------------------------- 11 d1a4ma_ 1 -----------TPAFNKPKVELHVHLDGAIKPETILYFGKKRGIALPADTVEELRNIIGM 49 d1ru8a_ 12 ---------------------------GKDSNYALYWAIKNRFSVKFLVTMVSENEESYM 44 ::::::::::::: :::::::::: d1a4ma_ 50 DKPLSLPGFLAKFDYYMPVIAGCREAIKRIAYEFVEMKAK--EGVVYVEVRY-------- 99 d1ru8a_ 45 YTINA--------------------------------NLTDLQARALGIPLVKGFTQG-- 70 :::::::::::::::::::: d1a4ma_ 100 -----SPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKVRSILCC-MR 153 d1ru8a_ 71 ----EKEKEVEDLKRVLSGLKIQGIVAGASKYQRKRIEKVAKELGLEVYTPAWGRDAKEY 126 ::::::::::: d1a4ma_ 154 HQPSWSLEVLELCKK--------------------------------------------- 168 d1ru8a_ 127 MRELLNLGFKIMVVGVSAYGLDESWLGRILDESALEELITLNEKYKVHVAGEGGEFETFV 186 d1a4ma_ 169 ------------------------------------------------------------ 169 d1ru8a_ 187 LDMPLFKYKIVVDKAKKVWEPCTSSGKLIIEEAHLESKLEH------------------- 227 d1a4ma_ 169 -----------------------------------------YNQKTVVAMDLAGDETIEG 187 d1ru8a_ 228 ------------------------------------------------------------ 228 d1a4ma_ 188 SSLFPGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYN 247 d1ru8a_ 228 ------------------------------------------------------------ 228 d1a4ma_ 248 RLLKENMHFEVCPWSSYLTGAWDPKTTHAVVRFKNDKANYSLNTDDPLIFKSTLDTDYQM 307 d1ru8a_ 228 ------------------------------------------ 228 d1a4ma_ 308 TKKDMGFTEEEFKRLNINAAKSSFLPEEEKKELLERLYREYQ 349 TMalign alignment (TM-score: 0.36 Raw score:81.26) d1ru8a_ 1 ---------GLADVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVS-------------- 37 :::: :::: d1a4ma_ 1 TPAFNKPKV--------ELHV---------------------HLDGAIKPETILYFGKKR 31 d1ru8a_ 38 ---------------------------ENEESY-MY------------TI---NAN--LT 52 ::::: :: : : d1a4ma_ 32 GIALPADTVEELRNIIGMDKPLSLPGF-LAKFDYYMPVIAGCREAIKR-IAYE--FVE-- 85 d1ru8a_ 53 DLQ-ARALGIPLVKGFTQ------------------------------------------ 69 ::: :::::::::::::: d1a4ma_ 86 MKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGLQEGEQAFGIKV 145 d1ru8a_ 70 ------G-EKEKEVEDLKRVLSGLKI---QGIVAG---A----SKYQ--RKRIEKVAKEL 110 : :::::::::::::::::: ::::: : :::: ::::::::: d1a4ma_ 146 RSILCCMRHQPSWSLEVLELCKKYNQKTV-VAMDLAGDETIEGSSLFPGHVEAYEGAV-- 202 d1ru8a_ 111 GLEVYTP--------------AWG------------R----DAKEYMRELLNLGFKIM-- 138 ::::::: ::: : ::::::::::::::::: d1a4ma_ 203 KNGIHRTVHAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENMHFEVCPWS 262 d1ru8a_ 139 VV-GVSAYGLDESWLGRILDESALE---ELITLNEKYKVHVAGEGGEFETFVLDMPLFKY 194 :: ::: :: ::::::::::::: :::: d1a4ma_ 263 SYLTGA---WD-PKTTHAVVRFKNDKAN----------------------YSLN------ 290 d1ru8a_ 195 KI-VVDKAKKVWEPCTSSGKLIIEEAHL--E-------------SK-------------- 224 : : :: ::::::: : :: d1a4ma_ 291 -TD-D-PL-------------IFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLPE 334 d1ru8a_ 225 ------------LEH 227 ::: d1a4ma_ 335 EEKKELLERLYREYQ 349 HHsearch alignment (Probability: 0.91 E-value:0.00) d1ru8a_ 6 AVLYSGGKDSNYALYWAIKNRFS-VKFLVTMVSENEES-YMYTINANLTDLQARALGIPL 63 ::::::::::::::::::::::: :::::::::::::: :::: :::::::::::::::: d1a4ma_ 150 CCMRHQPSWSLEVLELCKKYNQKTVVAMDLAGDETIEGSSLFP-GHVEAYEGAVKNGIHR 208 d1ru8a_ 64 VKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGASKYQRKRIEKVAKELGLE-VYTPA---- 118 :: ::::::::::::::::::::::::::::::::::::::::::::: ::::: d1a4ma_ 209 TV---HAGEVGSPEVVREAVDILKTERVGHGYHTIEDEALYNRLLKENMHFEVCPWSSYL 265 d1ru8a_ 119 ---WGRDAKEYMRELLNLGFKIMVVGVS 143 ::::::::::::::::::::::::: d1a4ma_ 266 TGAWDPKTTHAVVRFKNDKANYSLNTDD 293