Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ru8a_ | Putative N-type ATP pyrophosphatase PF0828 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1i0da_ | Phosphotriesterase (parathion hydrolase, PTE) | Metallo-dependent hydrolases | TIM beta/alpha-barrel | α/β |
Query <-- 0.937 --> IntermediateDALI alignment (Z-score: 6.9 Raw score:641.00) query 1 dadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALgaqNVYGVSMPSK 60 :::::::::::::::::::::::::: :::::::::: d1ru8a_ 1 ---------------------GLADVAVLYSGGKDSNYALYWAIKNR-fsVKFLVTMVSE 38 query 61 YS-----sDHSKGdAAELARRTGLNFRTVSIEpmfdaymaslgltglaEENLQSRLRGTT 115 :: ::::: :::::::::::::::::: :::::::::::: d1ru8a_ 39 NEesymytINANL-TDLQARALGIPLVKGFTQ---------------gEKEKEVEDLKRV 82 query 116 LMAIsnqEGHIVLAPGnkselavGYSTlyGDSVG------AYGPIKDVYKTSIFRLAEWR 169 :::: ::::::::: :::: ::::: :::::::::::::::::::: d1ru8a_ 83 LSGL---KIQGIVAGA------sKYQRkrIEKVAkelgleVYTPAWGRDAKEYMRELLNL 133 query 170 N------------------------------------raaaergqtppipEASItkpdyp 193 : :::: d1ru8a_ 134 GfkimvvgvsaygldeswlgrildesaleelitlnekykvhvageggefeTFVL------ 187 query 194 vldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkd 253 d1ru8a_ 188 ---------------------------------dmplfkykivvdkakkvwepctssgkl 214 query 254 rrlpitnrwregh 266 d1ru8a_ 215 iieeahleskleh 227 FAST alignment (Normalized score: 5.12 Raw score:1259.00) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQN-----VYGV 55 :::::::::::::::::::::::: :::: d1ru8a_ 1 ---------------------GLADVAVLYSGGKDSNYALYWAIK------NRFSVKFLV 33 query 56 SMPSKYSSDHS--------KGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLA---E 104 ::::::: ::::::::::::::::::: : d1ru8a_ 34 TMVSENE----ESYMYTINANLTDLQARALGIPLVKGF------------------TQGE 71 query 105 ENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLY-----GDSVG---------- 149 :::::::::::::: ::: ::::: :::: d1ru8a_ 72 KEKEVEDLKRVLSG--LKI-QGIVA---------------GASKYQRKR-IEKVAKELGL 112 query 150 -AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP------------------ 190 ::::::::::::::::::: d1ru8a_ 113 EVYTPAWGRDAKEYMRELLN----------------------LGFKIMVVGVSAYGLDES 150 query 191 ------------DYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQ 238 :::::::: d1ru8a_ 151 WLGRILDESALEELITLNEK---------------------------------------- 170 query 239 YPPGTKISAKGFGKDRRLPITNRWREGH-------------------------------- 266 d1ru8a_ 171 ----------------------------YKVHVAGEGGEFETFVLDMPLFKYKIVVDKAK 202 query 267 ------------------------- 267 d1ru8a_ 203 KVWEPCTSSGKLIIEEAHLESKLEH 227 TMalign alignment (TM-score: 0.41 Raw score:109.76) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK 60 ::::::::::::::::::::::::::: ::::::::::: d1ru8a_ 1 ---------------------GLADVAVLYSGGKDSNYALYWAIKNRF-SVKFLVTMVSE 38 query 61 YS-S---DHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTL 116 :: : :::::::::::::::::::::::: : : ::::::::::: d1ru8a_ 39 NEESYMYTINANLTDLQARALGIPLVKGFTQ--G-------------E-KEKEVEDLKRV 82 query 117 MAISNQEGHIVLAPGNKSELAVGYSTL-YGDSV-G------AYGPIKDVYKTSIFRLAEW 168 :::: ::::::::: :: : :: :::: : ::::::::::::::::::: d1ru8a_ 83 LSGL--KIQGIVAGA---SK--Y--QRK-RIEKVAKELGLEVYTPAWGRDAKEYMRELLN 132 query 169 RNRAAAERGQTPPIPEASITK---P-DY----------------PVLDAILELYVDRDTG 208 : : : : :::: : :: ::::: d1ru8a_ 133 L-G----------F-K-IMVVGVSAYGLDESWLGRILDESALEELITLN----------- 168 query 209 ADAIVAAGYDRELV---------------------------------------------- 222 ::: :: d1ru8a_ 169 -------EKY--KVHVAGEGGEFETFVLDMPLFKYKIVVDKAKKVWEPCTSSGKLIIEEA 219 query 223 --------VKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1ru8a_ 220 HLESKLEH-------------------------------------------- 227 HHsearch alignment (Probability: 0.94 E-value:0.00) query 22 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHS----KGDAAELARRT 77 ::::::::::::::::::::::::: ::::::::::::::::::: ::::::::::: d1ru8a_ 1 GLADVAVLYSGGKDSNYALYWAIKN-RFSVKFLVTMVSENEESYMYTINANLTDLQARAL 59 query 78 GLNFRTVSIEPMFDAYMASL 97 :::::::::::::::::::: d1ru8a_ 60 GIPLVKGFTQGEKEKEVEDL 79
Intermediate <-- 0.947 --> HitDALI alignment (Z-score: 1.9 Raw score:188.50) d1ru8a_ 1 ------------------------------------------------------------ 1 d1i0da_ 1 drintvrgpitiseagftlthehicgssagflrawpeffgsrkalaekavrglrraraag 60 d1ru8a_ 1 ----------------------------glaDVAVLYSGgkdsnyalywaiknrfsvkfl 32 :::::::: d1i0da_ 61 vrtivdvstfdigrdvsllaevsraadvhivAATGLWFD--------------------- 99 d1ru8a_ 33 vTMVSeneesymytinanltdlqaralgiplvkgftqgekEKEVEDLKRVLSGL------ 86 :::: :::::::::::::: d1i0da_ 100 -PPLS---------------------------------mrLRSVEELTQFFLREiqygie 125 d1ru8a_ 87 ----KIQGIVAGA---SKYQRKRIEKVAKELG----LEVYTPAwGRDA------------ 123 ::::::::: :::::::::::::::: ::::::: :::: d1i0da_ 126 dtgiRAGIIKVATtgkATPFQELVLKAAARASlatgVPVTTHT-AASQrdgeqqaaifes 184 d1ru8a_ 124 -------------------------------------------keymrellnlgfkimvv 140 d1i0da_ 185 eglspsrvcighsddtddlsyltalaargyligldhiphsaiglednasasallgirswq 244 d1ru8a_ 141 gvsaygldeswlgrildesaleelitlnekykvhvageggefetfvldmplfkykivvdk 200 d1i0da_ 245 trallikalidqgymkqilvsndwlfgfssyvtnimdvmdrvnpdgmafiplrvipflre 304 d1ru8a_ 201 akkvwepctssgkliieeahleskleh 227 d1i0da_ 305 kgvpqetlagitvtnparflsptlras 331 FAST alignment (Normalized score: 1.35 Raw score:369.30) d1ru8a_ 1 GLADVA-------------------VLYSG----------------------GKDSNYAL 19 :::: :::::::: d1i0da_ 1 ------DRINTVRGPITISEAGFTLTHEH-ICGSSAGFLRAWPEFFGSRKALAEKAVRGL 53 d1ru8a_ 20 YWAIKNRFSVKFLVTMVSENEESYMYTINA----NLTDLQARALGIPLVKGFTQG----- 70 ::::: :::::::::::::: :::::::::::::::::::: d1i0da_ 54 RRARA--AGVRTIVDVSTFDI---------GRDVSLLAEVSRAADVHIVAATGL-WFDPP 101 d1ru8a_ 71 ------EKEKEVEDLKRVLSGLKIQGIVAGASKYQRKRIEKVAKELGLEVYTPAWGRDAK 124 :::::::::::::: d1i0da_ 102 LSMRLRSVEELTQFFLREIQ---------------------------------------- 121 d1ru8a_ 125 EYMRELLNLGFKIMVVGVSAYGLDESWLGRILDESALEELITLNEKYKVHVAGEGGEFET 184 d1i0da_ 122 ------------------------------------------------------------ 122 d1ru8a_ 185 FVLDMPLFKYKIVVDKAKKVWEPCTSSGKLIIEEAHLESKLEH----------------- 227 d1i0da_ 122 -------------------------------------------YGIEDTGIRAGIIKVAT 138 d1ru8a_ 228 ------------------------------------------------------------ 228 d1i0da_ 139 TGKATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSD 198 d1ru8a_ 228 ------------------------------------------------------------ 228 d1i0da_ 199 DTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASASALLGIRSWQTRALLIKALIDQGY 258 d1ru8a_ 228 ------------------------------------------------------------ 228 d1i0da_ 259 MKQILVSNDWLFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVT 318 d1ru8a_ 228 ------------- 228 d1i0da_ 319 NPARFLSPTLRAS 331 TMalign alignment (TM-score: 0.39 Raw score:87.43) d1ru8a_ 1 GLADVAV------LYSGGKDSNYALYWAIKNRFSVK-F-LV-T--MVSENEESYMY---T 46 : :::: ::::: : :: : ::::: ::::: : d1i0da_ 1 D--RINTVRGPIT------------------ISEAGFTLTHEHICGSSAG-FLRAWPEFF 39 d1ru8a_ 47 INA--NL-TDLQ-AR--A-------L-----------------------GIPLVKGFT-- 68 ::: :: ::: :: : : ::::::::: d1i0da_ 40 GSRKALAE-KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATGLWF 98 d1ru8a_ 69 -QG--EK-E---KEVEDLKRVLSGL-----KI-QGIVAGAS---K----Y-QRKRIEKVA 107 :: :: : ::::::::::::: :: ::::::: : : ::::::::: d1i0da_ 99 DPPLSMRLRSVEELTQFFLREIQYGIEDTGIRA-GIIKVATTGKATPFQELVLKAAARAS 157 d1ru8a_ 108 KELGLEV---------------------------YTPAW-GRD-A-KE--YM-------- 127 : ::::: ::::: :: : :: :: d1i0da_ 158 L-ATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGH-SDDTDDLSYLTALAARGYL 215 d1ru8a_ 128 RELLNLGFKIMV-----VGVSAYGLDESWLGRI-LDESAL------------------EE 163 :::: :::::: ::::::::: :::::: d1i0da_ 216 IGLD--HIPHSAIGLED-------NASASALLGIRSWQTRALLIKALIDQGYMKQILV-- 264 d1ru8a_ 164 LITLNEKYKVHVAGEGGEFETFVLDMPLFKYKIVVDKAKKVWEPCTSSGKLIIEE-A--- 219 :::: ::: ::::: :::::: : d1i0da_ 265 --------------------SNDW--------LFG-FSSYV--------TNIMDVMDRVN 287 d1ru8a_ 220 HLE-SK-LE---H------------------------------- 227 ::: :: :: : d1i0da_ 288 PDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLRAS 331 HHsearch alignment (Probability: 0.94 E-value:0.00) d1ru8a_ 1 GLADVAVLYSG--GKDSNYALYWAIKNRFSVKFLVTMVSENEESY 43 ::::::::::: :::::::::::::::::::::::::::::::: d1i0da_ 60 GVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATGLWFDPPLSM 104