Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ni5a1 | Putative cell cycle protein MesJ, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1mjha_ | (Hypothetical( protein MJ0577 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
Query <-- 0.962 --> IntermediateDALI alignment (Z-score: 13.9 Raw score:1114.50) query 1 dadeevysALVVGLRAYVAknGFRSVLIGLSGGIDSALVAAIACDALG---aQNVYGVSM 57 ::::::::::: ::::::::::::::::::::::::::: :::::::: d1ni5a1 1 --------SMTLTLNRQLL--TSRQILVAFSGGLDSTVLLHQLVQWRTenpgVALRAIHV 50 query 58 PSKYS--SDHSKGDAAELARRTGLNFRTVSIEpmFDAYmaslgltgLAEE-NLQSRLRGT 114 ::::: ::::::::::::::::::::::::: :::: :::: ::::::::: d1ni5a1 51 HHGLSanADAWVTHCENVCQQWQVPLVVERVQ--LAQE--------GLGIeAQARQARYQ 100 query 115 TLMAISNqEGHIVLAPGNKSELAVGY-----------------stlygdsvgAYGPIKDV 157 ::::::: :::::::::::::::::: :::::::: d1ni5a1 101 AFARTLL-PGEVLVTAQHLDDQCETFllalkrgsgpaglsamaevsefagtrLIRPLLAR 159 query 158 YKTSIFRLAEWRNraaaergqtppIPEASitkpdypvldailelyvdrdtgadaivaagy 217 ::::::::::::: ::::: d1ni5a1 160 TRGELVQWARQYD-----------LRWIE------------------------------d 178 query 218 drelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1ni5a1 179 esnqddsydrnflrlrvvpllqqrwphfaeatarsaalcaeqeslldel 227 FAST alignment (Normalized score: 8.92 Raw score:2193.00) query 1 DADEEVYSA-LVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ-------NV 52 ::::::::: :::::::::::::::::::::::::: :: d1ni5a1 1 ---------SMTLTLNRQL--LTSRQILVAFSGGLDSTVLLHQLVQW----RTENPGVAL 45 query 53 YGVSMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE-----E 105 :::::::::: :::::::::::::::::::::::: :::: : d1ni5a1 46 RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV-----QLAQ---------EGLGIE 91 query 106 NLQSRLRGTTLMAISNQ--EGHIVLAPGNKSELAVGYSTLYGDSVG-------------- 149 :::::::::::::: ::::::::::::::: d1ni5a1 92 AQARQARYQAFART---LLPGEVLVTAQHLDDQC------------ETFLLALKRGSGPA 136 query 150 ---------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP---- 190 ::::::::::::::::::: d1ni5a1 137 GLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQ----------------------YDLR 174 query 191 -------------------------------DYPVLDAILELYVDRDTGADAIVAAGYDR 219 :::::::::::::: d1ni5a1 175 WIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE--------------- 219 query 220 ELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH-------- 266 d1ni5a1 220 -----------------------------------------------QESLLDEL 227 TMalign alignment (TM-score: 0.55 Raw score:147.16) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--A-QNVYGVSM 57 ::::::::::: : :::::::::::::::::::::::::: : :::::::: d1ni5a1 1 --------SMTLTLNRQLL-T-SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHV 50 query 58 PSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEE-NLQSRLRGT 114 ::::: ::::::::::::::::::::::::: : : ::: ::: ::::::::: d1ni5a1 51 HHGLSANADAWVTHCENVCQQWQVPLVVERVQ--L---A----QEG-LGIEAQARQARYQ 100 query 115 TLMAISNQEGHIVLAPGNKSELAVG-YS-----------------TLYGDS-V---GAYG 152 :::::: :::::::::::::::::: :: : : :::: d1ni5a1 101 AFARTL-LPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV-----SEFAGTRLIR 154 query 153 PIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK-------------PD-YPVLDAI 198 :::::::::::::::::: : :::::: :: ::::::: d1ni5a1 155 PLLARTRGELVQWARQYD-----------L-RWIEDESNQDDSYDRNFLRLRVVPLLQQR 202 query 199 LELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLP- 257 :::::: : : :::::::::: d1ni5a1 203 WPHFAE-A----------------------T------------------ARSAALCAEQE 221 query 258 ------ITNRWREGH 266 d1ni5a1 222 SLLDEL--------- 227 HHsearch alignment (Probability: 0.96 E-value:0.00) query 24 RSVLIGLSGGIDSALVAAIACDALGAQ---NVYGVSMPSKYSS--DHSKGDAAELARRTG 78 ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::: d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 query 79 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLA--------- 129 :::::::::: :::::::::::::::::::::::::::::::: d1ni5a1 74 VPLVVERVQL---------AQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 query 130 --------PGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERG 177 :::::::::::::::::::: ::::::::::::::::::::::::::: d1ni5a1 125 FLLALKRGSGPAGLSAMAEVSEFAGTRL-IRPLLARTRGELVQWARQYDLRWIEDE 179
Intermediate <-- 0.952 --> HitDALI alignment (Z-score: 8.8 Raw score:639.10) d1ni5a1 1 smtltlnrqlLTSRQILVAFSGGLDSTVLLHQLVQWRtENPGVALRAIHVHHG------- 53 ::::::::::::::::::::::::::: ::::::::::::::: d1mjha_ 1 ----------VMYKKILYPTDFSETAEIALKHVKAFK-TLKAEEVILLHVIDEreikvee 49 d1ni5a1 54 -----LSANADAWVTHCENVCQQWQ-----VPLVVERVqlaqeglgieaqarqARYQAFA 103 :::::::::::::::::::: :::::::: ::::::: d1mjha_ 50 fenelKNKLTEEAKNKMENIKKELEdvgfkVKDIIVVG---------------IPHEEIV 94 d1ni5a1 104 RTL--LPGEVLVTAQH--lDDQCETfllalkrgsgpaglsamaevSEFAGTRLIRPLlaR 159 ::: ::::::::::: :::::: :::::::::::: : d1mjha_ 95 KIAedEGVDIIIMGSHgktNLKEIL------------lgsvtenvIKKSNKPVLVVK--R 140 d1ni5a1 160 TRGelvqwarqydlrwiedesnqddsydrnflrlrvvpllqqrwphfaeatarsaalcae 219 ::: d1mjha_ 141 KNS--------------------------------------------------------- 143 d1ni5a1 220 qeslldel 227 d1mjha_ 144 -------- 144 FAST alignment (Normalized score: 4.64 Raw score:835.50) d1ni5a1 1 SMTLTLNRQLL-TSRQILVAFSGGLDSTVLLHQLVQWRTENP--GVALRAIHVHHG---- 53 ::::::::::::::::::::::::: :::::::::: d1mjha_ 1 -----------VMYKKILYPTDFSETAEIALKHVKAF-----KTLKAEEVILLH--VIDE 42 d1ni5a1 54 ------------LSANADAWVTHCENVCQQ---WQVPLVVERVQLAQEGLGIEA-QARQA 97 :::::::::::::::::: ::::::::::: ::::: d1mjha_ 43 REIKVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVV----------GIPHEE 92 d1ni5a1 98 RYQAFARTLLPG---EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEF------- 147 ::::::: :::::: d1mjha_ 93 IVKIAED-----EGVDIIIMG--------------------------------SHGKTNL 115 d1ni5a1 148 ---------------AGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLR 192 ::::::: d1mjha_ 116 KEILLGSVTENVIKKSNKPVLV-------------------------------------- 137 d1ni5a1 193 LRVVPLLQQRWPHFAEATARSAALCAEQESLLDEL------ 227 d1mjha_ 138 -----------------------------------VKRKNS 143 TMalign alignment (TM-score: 0.41 Raw score:94.02) d1ni5a1 1 SMTLTLNRQLLTSR-QILVAFSGGLDSTVLLHQLVQWRTENPG-VALRAIHVHHG--L-- 54 ::: :::::::::::::::::::: ::: ::: ::::::::::: : d1mjha_ 1 -----------VMYKKILYPTDFSETAEIALKHVK-AFK-TLKAEEVILLHVIDEREIKV 47 d1ni5a1 55 ------SA-NADAWVTHCENVCQQW-Q-----VPLVVERVQLAQEGLGIEAQARQARYQA 101 :: :::::::::::::::: : :::::::: ::::: d1mjha_ 48 EEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVG---------------IPHEE 92 d1ni5a1 102 FARTL--LPGEVLVTAQH---LDDQCETF----LLALKRGSGPAGLSAM-AEVSEFAGTR 151 ::::: ::::::::::: ::::::: : :::::::: d1mjha_ 93 IVKIAEDEGVDIIIMGSHGKT-NLKEILLGSVT---------------EN--VIKKSNKP 134 d1ni5a1 152 LIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATA 211 :::::: :: : d1mjha_ 135 VLVVKR-KN-S------------------------------------------------- 143 d1ni5a1 212 RSAALCAEQESLLDEL 227 d1mjha_ 144 ---------------- 144 HHsearch alignment (Probability: 0.95 E-value:0.00) d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSAN---------------A 58 :::::::::::::::::::::::::: ::::::::::::::::: : d1mjha_ 4 KKILYPTDFSETAEIALKHVKAFKTL-KAEEVILLHVIDEREIKVEEFENELKNKLTEEA 62 d1ni5a1 59 DAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 :::::::::::::::::::::::: ::::::::::: :::::::::::::: d1mjha_ 63 KNKMENIKKELEDVGFKVKDIIVV----GIPHEEIVKIA-------EDEGVDIIIMGSHG 111 d1ni5a1 119 DDQCETFLLALKRGSGPAGLSA 140 ::: ::::::::::::::: d1mjha_ 112 KTN----LKEILLGSVTENVIK 129