Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1j1ia_ | Meta cleavage compound hydrolase CarC | alpha/beta-Hydrolases | alpha/beta-Hydrolases | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 0.709 --> HitDALI alignment (Z-score: 3.3 Raw score:456.00) d1nnla_ 1 ------------selrklfysaDAVCFDVDstvirEEGIdelakicgvedavpfkaalte 48 :::::::: :::: d1j1ia_ 1 ayverfvnaggvetryleagkgQPVILIHG-----GGAG--------------------- 34 d1nnla_ 49 rlaliqpsreqvqrliaeqpphltpgIRELVSRLQeRNVQVFLI-SGGFRSivehvaskl 107 ::::::::: :::::::: :::::: d1j1ia_ 35 --------------------aesegnWRNVIPILA-RHYRVIAMdMLGFGK--------- 64 d1nnla_ 108 nipatnvfANRLkfyfngeyagFDETqptaESGG-KGKVIKLLkeKFHFkKIIMIGD--- 163 :::: :::: :::: :::::::: :::: ::::::: d1j1ia_ 65 --------TAKP----------DIEY-tqdRRIRhLHDFIKAM--NFDG-KVSIVGNsmg 102 d1nnla_ 164 GATDMEAC----pPADAFIGFGgnviRQQV------------------------------ 189 :::::::: ::::::::: :::: d1j1ia_ 103 GATGLGVSvlhseLVNALVLMG---sAGLVveydftregmvhlvkaltndgfkiddamin 159 d1nnla_ 190 -------------------------------------kdnaKWYIT-------------- 198 ::::: d1j1ia_ 160 srytyatdeatrkayvatmqwireqgglfydpefirkvqvpTLVVQgkddkvvpvetayk 219 d1nnla_ 199 -----------------------DFVELLG--------- 205 ::::::: d1j1ia_ 220 fldliddswgyiiphcghwamieHPEDFANatlsflslr 258 FAST alignment (Normalized score: 2.98 Raw score:686.10) d1nnla_ 1 SELRKLFYSA----------------------DAVCFDVDSTVIREEGIDELAKICGVED 38 :::::: d1j1ia_ 1 ----------AYVERFVNAGGVETRYLEAGKGQPVILI---------------------- 28 d1nnla_ 39 AVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPG------------IRELVSRLQERN 86 :::::::::: : d1j1ia_ 29 ------------------------------------HGGGAGAESEGNWRNVIPILAR-H 51 d1nnla_ 87 VQVFLISGGFRSIVEHVASKLNIPATN------VFANRLKFYFNGEYAGFDETQPTAES- 139 :::::: :::: d1j1ia_ 52 YRVIAM---------------------DMLGFGKTAK----------------------P 68 d1nnla_ 140 ------GGKGKVIKLLKEKFHF-KKIIMIGD---GATDME----ACPPADAFIGFGGNVI 185 :::::::::::::::: :::::::: :::::: :::::::::: d1j1ia_ 69 DIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVL------ 122 d1nnla_ 186 ------------------------------------------------------------ 186 d1j1ia_ 123 MGSAGLVVEYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIR 182 d1nnla_ 186 ----------------------------------RQQVKDNAKWYIT------------- 198 :::::::::::: d1j1ia_ 183 EQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYKFLDLIDDSW-GYIIPHCGHWAMI 241 d1nnla_ 199 -----DFVELLG------- 205 ::::: d1j1ia_ 242 EHPEDFANAT--LSFLSLR 258 TMalign alignment (TM-score: 0.42 Raw score:87.02) d1nnla_ 1 ---------------------SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDA 39 :::::::::: ::: : d1j1ia_ 1 AYVERFVNAGGVETRYLEAGK---------GQPVILIHGG-----GAG-A---------- 35 d1nnla_ 40 VPFKAALTERLALIQPSREQVQRLI-AEQPPHLTPGIRELVSRLQERNVQVFLISGGFRS 98 : ::: :::::::::::::::::::::::: d1j1ia_ 36 ------------------------ES----EGN---WRNVIPILARHYRVIAMDMLGFGK 64 d1nnla_ 99 IVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAE-SGGKGKVIKLLKEKFHFKK 157 ::: ::: ::: ::::::::::::::::::: d1j1ia_ 65 -----------------TAK------------PDI--EYTQDRRIRHLHDFIKAMNFDGK 93 d1nnla_ 158 IIMIG-D--GATDMEAC---P-PADAFIGFG----------------------------- 181 ::::: : :::::::: : ::::::::: d1j1ia_ 94 VSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEYDFTREGMVHLVKALTNDGFKI 153 d1nnla_ 182 ---------------------------------------------------GN--V--IR 186 :: : :: d1j1ia_ 154 DDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVP 213 d1nnla_ 187 --Q--QVKDNA--KWYIT-------D-------F-VELLG----- 205 : :::::: ::::: : : ::::: d1j1ia_ 214 VETAYKFLDLIDDSWGYIIPHCGHWAMIEHPEDFANATLSFLSLR 258 HHsearch alignment (Probability: 0.04 E-value:0.11) d1nnla_ 11 DAVCFDV 17 ::::::: d1j1ia_ 53 RVIAMDM 59