Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1r8sa_ | ADP-ribosylation factor | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 0.856 --> HitDALI alignment (Z-score: 2.4 Raw score:291.80) d1nnla_ 1 ----------------------------------------------------------SE 2 :: d1r8sa_ 1 mrilmvgldaagkttilyklklgeivttiptigfnvetveyknisftvwdvggqdkirPL 60 d1nnla_ 3 LRKLFYSADAVCFDVDstvireEGIDelakicgvedavpfkaalterlaliqpsreqvqr 62 :::::::::::::::: :::: d1r8sa_ 61 WRHYFQNTQGLIFVVD-----sNDRE---------------------------------- 81 d1nnla_ 63 liaeqpPHLT-PGIRELVSRlqeRNVQVFLISG-------gFRSIVEHVAS--klnipat 112 :::: ::::::::: :::::::::: :::::::::: d1r8sa_ 82 -----rVNEArEELMRMLAEdelRDAVLLVFANkqdlpnamNAAEITDKLGlhslrhrnw 136 d1nnla_ 113 NVFAnrlkfyfngeyagfdetqpTAES--GGKGKVIKLLKEKFhfkkiimigdgatdmea 170 :::: :::: :::::::::::::: d1r8sa_ 137 YIQA-------------------TCATsgDGLYEGLDWLSNQL----------------- 160 d1nnla_ 171 cppadafigfggnvirqqvkdnakwyitdfvellg 205 d1r8sa_ 161 ----------------------------------- 161 FAST alignment (Normalized score: 1.79 Raw score:323.70) d1nnla_ 1 S----------------------------------------------------------- 1 d1r8sa_ 1 -MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59 d1nnla_ 2 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQ 61 ::::::::::::::: d1r8sa_ 60 LWRHYFQNTQGLIFV--------------------------------------------- 74 d1nnla_ 62 RLIAEQPPHL-----TPGIRELVSRLQE-------RNVQVFLISGGFRS----------I 99 ::::::::::::: :::::::: : d1r8sa_ 75 ----------VDSNDRERVNEAREELMRMLAEDELRDAVLLVF------ANKQDLPNAMN 118 d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAE------------------SGG 141 ::::::::: ::: d1r8sa_ 119 AAEITDKLG------------------------------LHSLRHRNWYIQATCATSGDG 148 d1nnla_ 142 KGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFV 201 ::::::::::: d1r8sa_ 149 LYEGLDWLSNQ------------------------------------------------- 159 d1nnla_ 202 ELLG- 205 d1r8sa_ 160 ----L 160 TMalign alignment (TM-score: 0.30 Raw score:60.98) d1nnla_ 1 SELRKLFYSADAVCFDVDST---------------------------------------- 20 ::::::::::: d1r8sa_ 1 ---------MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 51 d1nnla_ 21 -VIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELV 79 ::::::::: d1r8sa_ 52 G--------------------------------------------------GQDKIRPLW 61 d1nnla_ 80 SRLQERNVQVFLISG--GF--RSIVEHVASKLNI------PATNVFANR----LKFYFNG 125 ::::::::::::::: :: ::::::::::::: ::::::::: d1r8sa_ 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP------- 114 d1nnla_ 126 EYAGFDET------------------QPTAESGGKGKVIKLLKEKFHF--KKIIMIGDGA 165 :::::: ::: :::: ::::::::::::: d1r8sa_ 115 --NAMNAAEITDKLGLHSLRHRNWYIQAT-CATS-GDGLYEGLDWLSNQL---------- 160 d1nnla_ 166 TDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLG 205 d1r8sa_ 161 ---------------------------------------- 161 HHsearch alignment (Probability: 0.01 E-value:0.13) d1nnla_ 78 LVSRLQERNVQVFLISGGFR 97 :::::::::::::::::::: d1r8sa_ 93 MLAEDELRDAVLLVFANKQD 112