Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1ou0a_ | Precorrin-8x methylmutase related protein | Precorrin-8X methylmutase CbiC/CobH | Flavodoxin-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 1.198 --> HitDALI alignment (Z-score: 3.5 Raw score:404.80) d1nnla_ 1 ----------------------------------------SELRKLFYSA----DAVCFD 16 :::::::::: :::::: d1ou0a_ 1 slaaidsmidpdisgpmrhivvkaihaagdfaiaplirysDGFFKSMLAKlkegCTIICD 60 d1nnla_ 17 VDSTVIreegidelakicgvedavpfkaalterlaliqpsreqvqrliaeqpphltpgIR 76 :::::: :: d1ou0a_ 61 SEMVRA----------------------------------------------------GI 68 d1nnla_ 77 ELvSRLQErNVQVFLISGgfrsivehvasklnipatnvfanrlkfyfngeyagfdetQPT 136 :: ::::: ::::::::: ::: d1ou0a_ 69 YS-RPVLE-RNRVVCYLN--------------------------------------dVRS 88 d1nnla_ 137 AES----------GGKGKVIKLLKekfhfkKIIMIGD-GATDM-EACPP-------aDAF 177 ::: ::::::::::: ::::::: ::::: ::::: ::: d1ou0a_ 89 KEMadvngitrsaAGIRIAMQDHR------NSVIVIGnAPTALlEAMRMieengwydIPI 142 d1nnla_ 178 IGF-ggnviRQQVKDNAK-----------------wyitDFVELLG-- 205 ::: ::::::::: ::::::: d1ou0a_ 143 VGIpvgfinASKAKEGLVsshieyisveghrggspiaasIVNGFGRfl 190 FAST alignment (Normalized score: 3.06 Raw score:604.90) d1nnla_ 1 ----------------------------------------SELRKLFYSA-----DAVCF 15 ::::::::: ::::: d1ou0a_ 1 SLAAIDSMIDPDISGPMRHIVVKAIHAAGDFAIAPLIRYSDGFFKSMLA-KLKEGCTIIC 59 d1nnla_ 16 DV--DSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTP 73 :::: d1ou0a_ 60 --DSEMVR---------------------------------------------------- 65 d1nnla_ 74 GIREL----VSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAG 129 :::::: ::::::: d1ou0a_ 66 -----AGIYSRPVLE-RNRVVCY------------------------------------- 82 d1nnla_ 130 FDET-------QPTAE---SGGKGKVIKLLKEKFHFK-KIIMIGD-GATDMEACPPA--- 174 :::: ::::::::::::::: ::::::: :::::: d1ou0a_ 83 ----LNDVRSKEMAD-VNGITRSAAGIRIAMQDH---RNSVIVIGNAPTALL-----EAM 129 d1nnla_ 175 ----------DAFIGFGGNVI--------RQQVKDNAKWYIT------------------ 198 :::: ::::::: d1ou0a_ 130 RMIEENGWYDIPIV-------GIPVGFINASKAKEG------LVSSHIEYISVEGHRGGS 176 d1nnla_ 199 -----DFVELLG--- 205 :::::: d1ou0a_ 177 PIAASIVNGFG-RFL 190 TMalign alignment (TM-score: 0.36 Raw score:74.69) d1nnla_ 1 --------------SEL--R---------------------KLFYSA-DA------VCFD 16 ::: : :::::: :: :::: d1ou0a_ 1 SLAAIDSMIDPDISGPMRHIVVKAIHAAGDFAIAPLIRYSDGFFKSMLAKLKEGCTIICD 60 d1nnla_ 17 VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIR 76 ::::::: ::: : d1ou0a_ 61 SEMVRAG------------------------------------------------IYS-R 71 d1nnla_ 77 ELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT 136 ::::::: : ::: :::: ::::: ::::::: d1ou0a_ 72 PVLERNR-----V-VCY-LNDV-----------------RSKEM---------ADVNGIT 98 d1nnla_ 137 A-E--------------------SGGKGKVIKLLKEKFHFKKIIMIGDGAT---DM-EA- 170 : : :::::::::::::: ::::::::::::: :: :: d1ou0a_ 99 RSAAGIRIAMQDHRNSVIVIGNAPTALLEAMRMIEEN-GWYDIPIVGIPVGFINASKAKE 157 d1nnla_ 171 CP--P-ADAFIG--FGGNVIRQQVK--DNAKWYITDFVELL-G- 205 :: : :::::: :::: :::::::::: : d1ou0a_ 158 GLVSSHIEYISVEG-------HRGGSP----IAASIVNGFGRFL 190 HHsearch alignment (Probability: 0.00 E-value:0.40) d1nnla_ 155 FKKIIMIGDGATD----MEACPP--------ADAFIGFGGNVIRQQVK 190 ::::::::::::: :::::: ::::::::::::::::: d1ou0a_ 112 RNSVIVIGNAPTALLEAMRMIEENGWYDIPIVGIPVGFINASKAKEGL 159