Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1q92a_ | 5'(3')-deoxyribonucleotidase (dNT-2) | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 1.231 --> HitDALI alignment (Z-score: 8.5 Raw score:795.10) d1nnla_ 1 selrklfysaDAVCFDVDSTVIREE-giDELAKicGVED---------------avpfka 44 ::::::::::::::: ::::: :::: d1q92a_ 1 -------graLRVLVDMDGVLADFEggfLRKFR--ARFPdqpfialedrrgfwvseqygr 51 d1nnla_ 45 alterLALIQPsreqVQRLIaeqPPHLTPGIRELVSRLQER-NVQVFLISGG------FR 97 :::::: ::::: :::::::::::::::::: :::::::::: :: d1q92a_ 52 lrpglSEKAIS--iwESKNF-ffELEPLPGAVEAVKEMASLqNTDVFICTSPikmfkyCP 108 d1nnla_ 98 SIVEHVASKLN--iPATNVFAnrlkfyfngeyagfdetqptaesgGKGKVIkllkekfhf 155 ::::::::::: ::::::: :::::: d1q92a_ 109 YEKYAWVEKYFgpdFLEQIVL----------------------trDKTVVS--------- 137 d1nnla_ 156 kkIIMIGDGATD-meacPPADAFIGFGgNVIRQQ-vKDNAKWYITDFV-ELLG------- 205 :::::::::: :::::::::: :::::: :::::::::::: :::: d1q92a_ 138 -aDLLIDDRPDItgaepTPSWEHVLFT-ACHNQHlqLQPPRRRLHSWAdDWKAildskrp 195 FAST alignment (Normalized score: 5.97 Raw score:1193.00) d1nnla_ 1 SELRKLFYSA---DAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQP-- 55 :::::::::::: ::::::::: d1q92a_ 1 ----------GRALRVLVDMDGVLA--DFEGGFLRK----------------------FR 26 d1nnla_ 56 ---------------------------------SREQVQ---RLIAEQPPHLTPGIRELV 79 ::::: :::: :::::::::::: d1q92a_ 27 ARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIW-ESKNFFF--ELEPLPGAVEAV 83 d1nnla_ 80 SRLQ-ERNVQVFLISGG--------FRSIVEHVASKLNI-----PATNVFANRLKFYFNG 125 :::: :::::::::: ::::::::::: :::::: d1q92a_ 84 KEMASLQNTDVFICT--SPIKMFKYCPYEKYAWVEK---YFGPDFLEQIV---------- 128 d1nnla_ 126 EYAGFDETQPTAESG---GKGKVIKLLKEKFHFKK---IIMIGDGATDMEACPPA----- 174 :::: ::::::: d1q92a_ 129 ---------------LTRDKTV-------------VSADLLIDDR----------PDITG 150 d1nnla_ 175 ------DAFIGFGGNVIRQQVKDNA-------------KWYITDFVELLG---------- 205 :::::: :::::::: d1q92a_ 151 AEPTPSWEHVLF-------------TACHNQHLQLQPPRRRLHSWA----DDWKAILDSK 193 d1nnla_ 206 -- 206 d1q92a_ 194 RP 195 TMalign alignment (TM-score: 0.54 Raw score:111.60) d1nnla_ 1 -SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVE-D-------------------- 38 ::::::::::::::::::::::::::::: : d1q92a_ 1 G--------RALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRL 52 d1nnla_ 39 ---AVPFKAALTERL-ALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQER--NVQVFLI 92 :: :: ::::: :: :::: :::::::::::::::::: ::::::: d1q92a_ 53 RPGLS--------EKA-ISIWE--SK-NFFF--ELEPLPGAVEAVKEMASLQNTDVFICT 98 d1nnla_ 93 SGG-----FRSIVEHVAS-KLN--IPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGK 144 ::: :::::::::: ::: ::::::: :: :::: d1q92a_ 99 SPIKMFKYCPYEKYAWVEKYFGPDFLEQIVL-------------------TR----DKTV 135 d1nnla_ 145 VIKLLKEKFHFKKIIMIGDGATDMEA--CPPADAFIGFGGNVIR-QQVKDN-AKWYITDF 200 : : ::::::::::: :: ::::::::::: :::: :: ::: :::::::: d1q92a_ 136 -V---S------ADLLIDDRPDI-TGAEPTPSWEHVLFT-ACHNQHL-QLQPPRRRLHSW 182 d1nnla_ 201 V-ELLG------- 205 : :::: d1q92a_ 183 ADDWKAILDSKRP 195 HHsearch alignment (Probability: 0.98 E-value:0.00) d1nnla_ 10 ADAVCFDVDSTVIREE-GIDELAK-ICGVEDAVPFKAALT----ERLA-----LIQPSRE 58 :::::::::::::::: ::::::: ::::::::::::::: :::: ::::::: d1q92a_ 3 ALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAIS 62 d1nnla_ 59 QVQRLIAEQPPHLTPGIRELVSRLQE-RNVQVFLISGGFRSIVEH------VASK-LNIP 110 :::::::::::::::::::::::::: :::::::::::::::::: :::: :::: d1q92a_ 63 IWESKNFFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPD 122 d1nnla_ 111 ATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEA 170 ::::::::::: :::::::::::::::::: d1q92a_ 123 ---------------------FLEQIVLTRDK----------TVVSADLLIDDRPDITGA 151 d1nnla_ 171 CPPADAFIGFGGNVIRQ 187 ::::::::::::::::: d1q92a_ 152 EPTPSWEHVLFTACHNQ 168