Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1mjna_ | Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) | vWA-like | vWA-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 1.402 --> HitDALI alignment (Z-score: 4.3 Raw score:447.60) d1nnla_ 1 selrklfysaDAVCFDVDstvireegidelakicgvedavpfkaalterlaliqpsreqv 60 :::::::: d1mjna_ 1 ------gnvdLVFLFDGS------------------------------------------ 12 d1nnla_ 61 qrliaeqpPHLT-pGIRELVSRLQERN------VQVFLISG------gfrsivehvaskl 107 :::: ::::::::::::: :::::::: d1mjna_ 13 -----mslQPDEfqKILDFMKDVMKKCsntsyqFAAVQFSTsyktefdfsdyvkrkdpda 67 d1nnla_ 108 NIPAtnvfanrlkfyfngeyagfdetqptaesgGKGKVIKLLKEKFH----------fKK 157 :::: :::::::::::::: :: d1mjna_ 68 LLKH---------------------vkhmllltNTFGAINYVATEVFreelgarpdatKV 106 d1nnla_ 158 IIMIGDGAT-----dmeacppaDAFIGFGgnVIRQ--QVKDNAK-----------WYITD 199 ::::::::: ::::::: :::: ::::::: ::::: d1mjna_ 107 LIIITDGEAtdsgnidaakdiiRYIIGIG--KHFQtkESQETLHkfaskpasefvKILDT 164 d1nnla_ 200 FVELLG--------- 205 :::::: d1mjna_ 165 FEKLKDlctelqkki 179 FAST alignment (Normalized score: 3.47 Raw score:665.40) d1nnla_ 1 SELRKLFYSA----DAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPS 56 :::::: d1mjna_ 1 ----------GNVDLVFLFD---------------------------------------- 10 d1nnla_ 57 REQVQRLIAEQPPHL---------TPGIRELVSRLQE------RNVQVFLISGGFRSIVE 101 ::::::::::::: :::::::: d1mjna_ 11 ---------------GSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQF--------- 46 d1nnla_ 102 HVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAES---------------------- 139 d1mjna_ 47 --------------------------------------STSYKTEFDFSDYVKRKDPDAL 68 d1nnla_ 140 ----------GGKGKVIKLLKEKFHF-------------KKIIMIGDGATDMEACPPA-- 174 ::::::::::::: ::::::::: d1mjna_ 69 LKHVKHMLLLTNTFGAINYVATE---VFREELGARPDATKVLIIITDG----------EA 115 d1nnla_ 175 -------------DAFIGFGGNV-----IRQQVKDNA------------KWYITDFVELL 204 ::::: :::::::: ::::::::: d1mjna_ 116 TDSGNIDAAKDIIRYIIG-----IGKHFQTKESQET-LHKFASKPASEFVKILDTFEK-- 167 d1nnla_ 205 G------------ 205 d1mjna_ 168 -LKDLCTELQKKI 179 TMalign alignment (TM-score: 0.44 Raw score:90.13) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 :::::::::: :: ::: : d1mjna_ 1 --------GNVDLVFLFD------GS-MSL-Q---------------------------- 16 d1nnla_ 61 QRLIAEQP-PHLT-PGIRELVSRLQERNVQVFLISGG--FRSIVE----HVA--S-KLNI 109 :: :::: ::::::::::::::::::::::: ::: :: : : :::: d1mjna_ 17 ------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKT-EFDFSD--YVKRKDPDA 67 d1nnla_ 110 PA-TNVFA-NR----LKFYFNGEYAGFDETQPT-AES--GGKGKVIKLLKEK-FHFKKII 159 :: ::: : : :: ::::::::::::: ::::::: d1mjna_ 68 LLK--HVKH-MLLLT-----------------NT-FGAINYVATEVFREELGARPDATKV 106 d1nnla_ 160 MIGDG---A-T--DME-ACPPADAFIGFGGN-VI-----RQQVKDNA-K----WYIT--- 198 ::::: : : :: ::: :::::::::: :: :::::::: : :::: d1mjna_ 107 LIIITDGEATDSG-NIDAAK-DIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDT 164 d1nnla_ 199 --DFVELLG------ 205 ::::::: d1mjna_ 165 FEKLKDLCTELQKKI 179 HHsearch alignment (Probability: 0.24 E-value:0.02) d1nnla_ 69 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVE 101 ::::::::::::::::::::::::::::::::: d1mjna_ 21 QKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE 53