Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1qyia_ | Hypothetical protein MW1667 (SA1546) | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 1.861 --> HitDALI alignment (Z-score: 10.1 Raw score:1050.20) d1nnla_ 1 selrklfysaDAVCFDVDSTVIREegiDELAKICGV------------------------ 36 :::::::::::::: ::::::::: d1qyia_ 1 ---------mKKILFDVDGVFLSE---ERCFDVSALtvyellmdkcylglhshidwetlt 48 d1nnla_ 37 --------------EDAVpfkaalTERL--ALIQ-------------------------- 54 :::: :::: :::: d1qyia_ 49 dndiqdirnrifqkDKILnklkslGLNSnwDMLFivfsihlidilkklshdeieafmyqd 108 d1nnla_ 55 ------------------------------------------------------------ 55 d1qyia_ 109 epvelklqnistnladcfnlneqlplqfldnvkvgknniyaaleefattelhvsdatlfs 168 d1nnla_ 55 --------pSREQVQRLIA------------------EQPP--HLTP---GIRELVSRLQ 83 :::::::::: :::: :::: :::::::::: d1qyia_ 169 lkgalwtlaQEVYQEWYLGsklyedvekkiarttfktGYIYqeIILRpvdEVKVLLNDLK 228 d1nnla_ 84 ERNVQVFLISGGFRSIVEHVA--SKLN--IPATNVFANRlkfyfngeyagfDETQ----- 134 ::::::::::::::::::::: :::: :::::::::: :::: d1qyia_ 229 GAGFELGIATGRPYTETVVPFenLGLLpyFEADFIATAS----------dvLEAEnmypq 278 d1nnla_ 135 -ptAESGGkGKVIKL-LKEK---------------fhfKKIIMIGDGATDMEAC-PPADA 176 ::::: :::::: :::: :::::::::::::::: ::::: d1qyia_ 279 arpLGKPN-PFSYIAaLYGNnrdkyesyinkqdnivnkDDVFIVGDSLADLLSAqKIGAT 337 d1nnla_ 177 FIGFGGNV----IRQQVKDN-AKWYITDFVELLG--------- 205 :::::::: :::::::: ::::::::::::: d1qyia_ 338 FIGTLTGLkgkdAAGELEAHhADYVINHLGELRGvldnllehh 380 FAST alignment (Normalized score: 6.58 Raw score:1836.00) d1nnla_ 1 SELRKLFYSA-DAVCFDVDSTVIRE--EGIDELAKICGVEDAVPFKA------------- 44 :::::::::::: ::::::::: d1qyia_ 1 ----------MKKILFDVDGVFL--SEERCFDVSAL-----------TVYELLMDKCYLG 37 d1nnla_ 45 --------------------------------------ALTERLALIQP----------- 55 :::::::: d1qyia_ 38 LHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDMLFI---VFSIHLIDILK 94 d1nnla_ 56 ------------------------------------------------------------ 56 d1qyia_ 95 KLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEF 154 d1nnla_ 56 --------------------------SREQVQ--------------------RLIAEQPP 69 ::::: :::: :: d1qyia_ 155 ATTELHVSDATLFSLKGALWTLAQEVYQEWY-LGSKLYEDVEKKIARTTFKTGYIY--QE 211 d1nnla_ 70 HL---TPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKL----NIPATNVFANRLKFY 122 :: :::::::::::::::::::::::::::::::::::: ::::::::: d1qyia_ 212 IILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIAT------ 265 d1nnla_ 123 FNGEYAGFDETQPTAE---------------SGGK--GKVIKLLKEKFHFK--------- 156 :::: :::::::: d1qyia_ 266 ----------------ASDVLEAENMYPQARPLGKPNPFSYIAAL------YGNNRDKYE 303 d1nnla_ 157 -------------KIIMIGDGATDMEACPPA-DAFIGFGGNV-------IRQQVKD-NAK 194 :::::::::::::::::: ::::::: ::::::: ::: d1qyia_ 304 SYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTL---TGLKGKDAAGELEAHHAD 360 d1nnla_ 195 WYITDFVELLG----------- 205 ::::::::: d1qyia_ 361 YVINHLGEL--RGVLDNLLEHH 380 TMalign alignment (TM-score: 0.67 Raw score:137.98) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGV------------------------ 36 ::::::::::::::::::::::::::: d1qyia_ 1 ---------MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDND 51 d1nnla_ 37 ----E---D-----A--V---PFKAALTERLA--L------------------------- 52 : : : : ::: :::: : d1qyia_ 52 IQDIRNRIFQKDKILNKLKSL---GLN-SNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQ 107 d1nnla_ 53 ------------------------------------------------------------ 53 d1qyia_ 108 DEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATLF 167 d1nnla_ 53 ---------IQPS-REQ-VQ------------------RLIAEQPPHLTP--GIRELVSR 81 :::: ::: :: :::: ::::::: :::::::: d1qyia_ 168 SLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIY-QEIILRPVDEVKVLLND 226 d1nnla_ 82 LQERNVQVFLISGGFRSIVEHVAS--KL-N-IPATNVFANRLKFYFNGEYAGFDETQP-- 135 :::::::::::::::::::::::: :: : :::::::::: :::::: d1qyia_ 227 LKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATAS-----------DVLEAENM 275 d1nnla_ 136 -----TAESGGKGKVIKLLKEKF--------------HFK--KIIMIGDGATDMEAC-PP 173 :::::: ::::::::::: ::: ::::::::::::::: :: d1qyia_ 276 YPQARPLGKPN-PFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKI 334 d1nnla_ 174 ADAFIGFGGN--VI-R-QQVKDN-AKWYITDFVELL---G------ 205 :::::::::: :: : :::::: :::::::::::: : d1qyia_ 335 GATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH 380 HHsearch alignment (Probability: 1.00 E-value:0.00) d1nnla_ 69 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNV---FANRLKFYFNG 125 :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: d1qyia_ 214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAE 273 d1nnla_ 126 EYAGFDETQPTAESGGKGKVIKL--------------LKEKFHFKKIIMIGDGATDMEAC 171 :::: ::::::::::::::::: ::::::::::::::::::::::: d1qyia_ 274 NMYP--QARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSA 331 d1nnla_ 172 PPAD---AFIGFGGN--VIR-QQVKDNAKWYITDFVELL 204 :::: :::::::: ::: :::::::::::::::::: d1qyia_ 332 QKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELR 370