Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1nf2a_ | Hypothetical protein TM0651 | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 1.882 --> HitDALI alignment (Z-score: 12.4 Raw score:959.90) d1nnla_ 1 selrklfySADAVCFDVDSTVIREegidelakicgvedavpfkaalterlaliqpsreqv 60 :::::::::::::::: d1nf2a_ 1 --------MYRVFVFDLDGTLLND------------------------------------ 16 d1nnla_ 61 qrliaeqpPHLTPGIRELVSRLQErNVQVFLISGGFRSIVEHVASKLNiPATNVFANrlk 120 :::::::::::::::: ::::::::::::::::::::::: :::::::: d1nf2a_ 17 -------nLEISEKDRRNIEKLSR-KCYVVFASGRMLVSTLNVEKKYFkRTFPTIAY--n 66 d1nnla_ 121 fyfngeyagfDETQptA------------------------------------------- 137 :::: : d1nf2a_ 67 gaivylpeegVILN--Ekippevakdiieyikplnvhwqayiddvlysekdneeiksyar 124 d1nnla_ 138 ------------------------------------------------------------ 138 d1nf2a_ 125 hsnvdyrvepnlselvskmgttklllidtperldelkeilserfkdvvkvfksfptylei 184 d1nnla_ 138 ---ESGgKGKVIKLLKEKFHFK--KIIMIGDGATDMEACPPADAFIGFGgnVIRQQVKDN 192 ::: ::::::::::::::: ::::::::::::::::::::::::: ::::::::: d1nf2a_ 185 vpkNVD-KGKALRFLRERMNWKkeEIVVFGDNENDLFMFEEAGLRVAME--NAIEKVKEA 241 d1nnla_ 193 AKWYIT-----DFVELLG-------- 205 :::::: ::::::: d1nf2a_ 242 SDIVTLtnndsGVSYVLEristdcld 267 FAST alignment (Normalized score: 7.16 Raw score:1674.00) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 :::::::::::::: d1nf2a_ 1 --------MYRVFVFDLDGTLL-------------------------------------- 14 d1nnla_ 61 QRLIAEQ--PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFAN- 117 :::::::::::::::: :::::::::::::::::::::: d1nf2a_ 15 -------NDNLEISEKDRRNIEKLS-RKCYVVFASGRMLVSTLNVEKK-----------Y 55 d1nnla_ 118 ------------------------------------------------------------ 118 d1nf2a_ 56 FKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKD 115 d1nnla_ 118 ------------------------------RLKFYFNGEYA------------------- 128 :::: d1nf2a_ 116 NEEIKSYARHSNVDYRVEPNLSELVSKMGTTKLL-------LIDTPERLDELKEILSERF 168 d1nnla_ 129 ---------------GFDETQPTAESG-GKGKVIKLLKEKFHF--KKIIMIGDGATDMEA 170 ::::: ::::::::::::::: ::::::::::::::: d1nf2a_ 169 KDVVKVFKSFPTYLEIVPKN-------VDKGKALRFLRERMNWKKEEIVVFGDNENDLFM 221 d1nnla_ 171 CPPADAFIGFGGNVIRQQVKDNAKWYITD---------FVELLG--------- 205 :::::::::: :::::::::::::: :::: d1nf2a_ 222 FEEAGLRVAM--ENAIEKVKEASDIV---TLTNNDSGVSYVL--ERISTDCLD 267 TMalign alignment (TM-score: 0.60 Raw score:122.77) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 :::::::::::::::: d1nf2a_ 1 --------MYRVFVFDLDGTLLND------------------------------------ 16 d1nnla_ 61 QRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFAN--- 117 ::::::::::::::::: :::::::::::::::::::::::::::::::: d1nf2a_ 17 -------NLEISEKDRRNIEKLSR-KCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGA 68 d1nnla_ 118 ---------------------------------------RLKFYF--------------- 123 :::::: d1nf2a_ 69 IVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDNEEIKSYARHSNV 128 d1nnla_ 124 -NGEY--A---G----FDE-------------------------------------TQPT 136 :::: : : ::: d1nf2a_ 129 DYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEI---- 184 d1nnla_ 137 AE-SGGKGKVIKLLKEKFHFK--KIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNA 193 :: :::::::::::::::::: ::::::::::::::::::::::::: :::::::::: d1nf2a_ 185 VPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAME--NAIEKVKEAS 242 d1nnla_ 194 KWYIT-----DFVE-LLG------- 205 ::::: :::: ::: d1nf2a_ 243 DIVTLTNNDSGVSYVLERISTDCLD 267 HHsearch alignment (Probability: 0.99 E-value:0.00) d1nnla_ 138 ESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYI 197 :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: d1nf2a_ 189 VDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAME--NAIEKVKEASDIVT 246 d1nnla_ 198 TDFV 201 :::: d1nf2a_ 247 LTNN 250