Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1u02a_ | Trehalose-6-phosphate phosphatase related protein | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 2.025 --> HitDALI alignment (Z-score: 9.8 Raw score:811.10) d1nnla_ 1 selrklfysaDAVCFDVDSTVIREegIDELakicgvedavpfkaalterlaliqpsreqv 60 :::::::::::::: :::: d1u02a_ 1 ----------SLIFLDYDGTLVPI--IMNP------------------------------ 18 d1nnla_ 61 qrliaeQPPHLTPGIRELVSRLQErNVQVFLISGGFRSIVEHVAsKLNIpatNVFAN--- 117 :::::::::::::::::: ::::::::::::::::::: :::: ::::: d1u02a_ 19 ------EESYADAGLLSLISDLKE-RFDTYIVTGRSPEEISRFL-PLDI---NMICYhga 67 d1nnla_ 118 -----------------------rlkfYFNGE---------------------------- 126 ::::: d1u02a_ 68 cskingqivynngsdrflgvfdriyedTRSWVsdfpglriyrknlavlyhlglmgadmkp 127 d1nnla_ 127 ---------------------yaGFDETqptAESGgKGKVIKLLKEkfhFKKIIMIGDGA 165 ::::: :::: :::::::::: ::::::::::: d1u02a_ 128 klrsrieeiarifgvetyygkmiIELRV---PGVN-KGSAIRSVRG---ERPAIIAGDDA 180 d1nnla_ 166 TDMEACPPA--DAFIGFGgnviRQQVkdNAKWYIT----DFVELLG--------- 205 ::::::::: ::::::: :::: ::::::: ::::::: d1u02a_ 181 TDEAAFEANddALTIKVG----EGET--HAKFHVAdyieMRKILKFiemlgvqkk 229 FAST alignment (Normalized score: 6.05 Raw score:1311.00) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 :::::::::::: d1u02a_ 1 ----------SLIFLDYDGTLV-------------------------------------- 12 d1nnla_ 61 QRLIAEQ-------PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATN 113 ::::::::::::::::: ::::::::::::::::::: :::: d1u02a_ 13 -------PIIMNPEESYADAGLLSLISDLKE-RFDTYIVTGRSPEEISRFL-PLDI---- 59 d1nnla_ 114 VFANRLKFYFNGEYA--------------------------------------------- 128 d1u02a_ 60 ---------------NMICYHGACSKINGQIVYNNGSDRFLGVFDRIYEDTRSWVSDFPG 104 d1nnla_ 129 ------------------------------------------------GFDETQPTAESG 140 :::::: d1u02a_ 105 LRIYRKNLAVLYHLGLMGADMKPKLRSRIEEIARIFGVETYYGKMIIELRVPGV------ 158 d1nnla_ 141 GKGKVIKLLKEKFHF--KKIIMIGDGATDMEACPPA---DAFIGFGGNVIRQQVK----- 190 :::::::::: :::::::::::::::::: ::::: d1u02a_ 159 NKGSAIRSVR-----GERPAIIAGDDATDEAAFEA-NDDALTIK-----------VGEGE 201 d1nnla_ 191 DNAKWYIT-------DFVELLG------- 205 :::::::: :::::: d1u02a_ 202 THAKFHVADYIEMRKILKFIE-MLGVQKK 229 TMalign alignment (TM-score: 0.53 Raw score:109.60) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 ::::::::::::::: ::: d1u02a_ 1 ----------SLIFLDYDGTLVPII--MNP------------------------------ 18 d1nnla_ 61 QRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFA--NR 118 ::::::::::::::::::: ::::::::::::::::::: :::: :::: :: d1u02a_ 19 ------EESYADAGLLSLISDLKER-FDTYIVTGRSPEEISRFLP-LDIN--MICYHGAC 68 d1nnla_ 119 ----------------L--KFY-FNGEYA---------------GFD------------- 131 : ::: :::: ::: d1u02a_ 69 SKINGQIVYNNGSDRFLGVFDRI--YEDTRSWVSDFPGLRIYRKNLAVLYHLGLMGADMK 126 d1nnla_ 132 ---------------ET----------QPTAESGGKGKVIKLLKEKFHFKKIIMIGDGAT 166 :: :::::::::::::::: :::::::::::: d1u02a_ 127 PKLRSRIEEIARIFGVETYYGKMIIEL--RVPGVNKGSAIRSVRG---ERPAIIAGDDAT 181 d1nnla_ 167 DMEACPPA--DAFIGFGGNVIRQQVKDNAKWYIT---D-FVELLG--------- 205 :::::::: :::::: ::::: ::::::: : :::::: d1u02a_ 182 DEAAFEANDDALTIKV----GEGET--HAKFHVADYIEMRKILKFIEMLGVQKK 229 HHsearch alignment (Probability: 0.99 E-value:0.00) d1nnla_ 137 AESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADA--FIGFGGNVIRQQVKDNAK 194 ::::::::::::::: :::::::::::::::::::::: :::::: :::::: d1u02a_ 155 VPGVNKGSAIRSVRG---ERPAIIAGDDATDEAAFEANDDALTIKVGE------GETHAK 205 d1nnla_ 195 WYITDFVELL 204 :::::::::: d1u02a_ 206 FHVADYIEMR 215