Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1zrna_ | L-2-Haloacid dehalogenase, HAD | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 2.037 --> HitDALI alignment (Z-score: 11.6 Raw score:1044.50) d1nnla_ 1 selrklfySADAVCFDVDSTVIREegidELAKICG------VEDAV---------PFKA- 44 :::::::::::::::: ::::::: ::::: :::: d1zrna_ 1 --------YIKGIAFDLYGTLFDV---hSVVGRCDeafpgrGREISalwrqkqleYTWLr 49 d1nnla_ 45 -----------ALTERLALIQ---------pSREQVQRLIaeqPPHLTPGIRELVSRLQE 84 :::::::::: ::::::::: ::::::::::::::::: d1zrna_ 50 slmnryvnfqqATEDALRFTCrhlgldldarTRSTLCDAY--lRLAPFSEVPDSLRELKR 107 d1nnla_ 85 RNVQVFLISGGFRSIVEHVAS---KLNIPatNVFAnrlkfyfngeyagfdeTQPTaESGG 141 ::::::::::::::::::::: ::::: :::: :::: :::: d1zrna_ 108 RGLKLAILSNGSPQSIDAVVShagLRDGF-dHLLS---------------vDPVQ-VYKP 150 d1nnla_ 142 kGKVIKLLKEKFHFK--KIIMIGDGATDM-EACPPADAFIGFGGnVIRQQV--kdNAKWY 196 :::::::::::::: :::::::::::: :::::::::::::: :::::: ::::: d1zrna_ 151 dNRVYELAEQALGLDrsAILFVASNAWDAtGARYFGFPTCWINR-TGNVFEemgqTPDWE 209 d1nnla_ 197 ITDFVELLG-- 205 ::::::::: d1zrna_ 210 VTSLRAVVElf 220 FAST alignment (Normalized score: 7.94 Raw score:1687.00) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIRE--EGIDELAKICG-----VEDAV------------- 40 :::::::::::::: ::::::::: :::: d1zrna_ 1 --------YIKGIAFDLYGTLF--DVHSVVGRCDE--AFPGRGREI-SALWRQKQLEYTW 47 d1nnla_ 41 -------------PFKAALTERLA--LIQPSREQVQRLIAEQ----------PPHLTPGI 75 ::::::::::: ::::::: :::::::: d1zrna_ 48 LRSLMNRYVNFQQATEDALRFTCRHLGLDLDAR---------TRSTLCDAYLRLAPFSEV 98 d1nnla_ 76 RELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQP 135 ::::::::::::::::::::::::::::::::: d1zrna_ 99 PDSLRELKRRGLKLAILSNGSPQSIDAVVSHAG--------------------------- 131 d1nnla_ 136 TAESGG-------------------KGKVIKLLKEKFHFK---KIIMIGD-GATDMEACP 172 :::::::::::::: ::::::: ::::::::: d1zrna_ 132 ------LRDGFDHLLSVDPVQVYKPDNRVYELAEQALGL-DRSAILFVASNAWDATGARY 184 d1nnla_ 173 PA--DAFIGFGGNVIRQQVKD-------NAKWYITDFVELLG--- 205 ::::::: :::: ::::::::::::: d1zrna_ 185 --FGFPTCWIN-RTGN-----VFEEMGQTPDWEVTSLRAVV-ELF 220 TMalign alignment (TM-score: 0.65 Raw score:132.25) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGV---E--D--AV-------PFKAA- 45 :::::::::::::::::: ::::::::: : : :: ::::: d1zrna_ 1 --------YIKGIAFDLYGTLFDVHS-VVGRCDEAFPGRGREISALWRQKQLEYTWLRSL 51 d1nnla_ 46 ------L-TERLALIQ-----------PS-REQVQRLIAEQPPHLTPGIRELVSRLQERN 86 : :::::::: :: :::::::: :::::::::::::::::::: d1zrna_ 52 MNRYVNFQQATEDALRFTCRHLGLDLDARTRSTLCDAY--LRLAPFSEVPDSLRELKRRG 109 d1nnla_ 87 VQVFLISGGFRSIVEHVAS--KL-NIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKG 143 ::::::::::::::::::: :: ::: :::::: ::::::::: : d1zrna_ 110 LKLAILSNGSPQSIDAVVSHAGLRDGF-DHLLSV---------------DPVQVYKPD-N 152 d1nnla_ 144 KVIKLLKEKFHFK--KIIMIGDG-ATDMEACPPADAFIGFGGNVIRQQVK--DNAKWYIT 198 ::::::::::::: :::::::: :::::::::::::::::: ::::::: :::::::: d1zrna_ 153 RVYELAEQALGLDRSAILFVASNAWDATGARYFGFPTCWINR-TGNVFEEMGQTPDWEVT 211 d1nnla_ 199 DFVELLG-- 205 ::::::: d1zrna_ 212 SLRAVVELF 220 HHsearch alignment (Probability: 1.00 E-value:0.00) d1nnla_ 10 ADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALT---------------------- 47 :::::::::::::::::::::::::::::::::::::: d1zrna_ 2 IKGIAFDLYGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNRYVNFQQA 61 d1nnla_ 48 ------ERLALI-QPSREQVQR--LIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRS 98 :::::: ::::::::: :::::::::::::::::::::::::::::::::::: d1zrna_ 62 TEDALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQ 121 d1nnla_ 99 IVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKI 158 ::::::::::::: ::: :::: :::::::::::::::::::::::::::: d1zrna_ 122 SIDAVVSHAGLRD--GFD--------HLLS--VDPVQVYKPDNRVYELAEQALGLDRSAI 169 d1nnla_ 159 IMIGDGATDMEACPPADAFIGF-GGN-VIRQQVKDNAKWYITDFVELLG 205 :::::::::::::::::::::: ::: :::::::::::::::::::::: d1zrna_ 170 LFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVE 218