Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1rqla_ | Phosphonoacetaldehyde hydrolase | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 2.052 --> HitDALI alignment (Z-score: 12.5 Raw score:1168.00) d1nnla_ 1 selrklfySADAVCFDVDSTVIR--EEGIDELAKICG-------VEDAV--pfkaALTER 49 ::::::::::::::: :::::::::::: ::::: ::::: d1rqla_ 1 --------KIEAVIFDWAGTTVDygCFAPLEVFMEIFhkrgvaiTAEEArkpmglLKIDH 52 d1nnla_ 50 LALI------------------------qPSREQVQRLIAEQP--PHLTPGIRELVSRLQ 83 :::: :::::::::::::: ::::::::::::::: d1rqla_ 53 VRALtempriasewnrvfrqlpteadiqeMYEEFEEILFAILPryASPINAVKEVIASLR 112 d1nnla_ 84 ERNVQVFLISGGFRSIVEHVAS-----KLNIPatNVFANRlkfyfngeyagfdetQPTAE 138 :::::::::::::::::::::: ::::: :::::: ::::: d1rqla_ 113 ERGIKIGSTTGYTREMMDIVAKeaalqGYKPD--FLVTPD---------------DVPAG 155 d1nnla_ 139 SGGkGKVIKLLKEK-FHFK--KIIMIGDGATDMEA-CPPADAFIGFGGNV---------- 184 ::: :::::::::: :::: :::::::::::::: :::::::::::::: d1rqla_ 156 RPY-PWMCYKNAMElGVYPmnHMIKVGDTVSDMKEgRNAGMWTVGVILGSselglteeev 214 d1nnla_ 185 --------------IRQQVKDN-AKWYITDFVELLG------- 205 :::::::: ::::::::::::: d1rqla_ 215 enmdsvelrekievVRNRFVENgAHFTIETMQELESvmehiek 257 FAST alignment (Normalized score: 8.53 Raw score:1957.00) d1nnla_ 1 SELRKLFYSADAVCFDVDSTV-IRE-EGIDELAKIC--------GVEDAVPFKA------ 44 ::::::::::::: ::: ::::::::: ::::: d1rqla_ 1 --------KIEAVIFDWAGTTVDYGCFAPLEVFME-IFHKRGVAITAEE-----ARKPMG 46 d1nnla_ 45 -ALTERLALIQP-----------------------SREQVQRLIAEQP--------PHLT 72 :::::::: ::::::::::: :::: d1rqla_ 47 LLKIDHVRA---LTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEI--LFAILPRYASPI 101 d1nnla_ 73 PGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPAT---------NVFANRLKFYF 123 :::::::::::::::::::::::::::::::::: :::: d1rqla_ 102 NAVKEVIASLRERGIKIGSTTGYTREMMDIVAKE------AALQGYKPDFLVT------- 148 d1nnla_ 124 NGEYAGFDETQPTAESGGK----------GKVIKLLKEKFHFK----KIIMIGDGATDME 169 ::::::::::::: ::::::::::::: d1rqla_ 149 -------------------PDDVPAGRPYPWMCYKNAMELGV-YPMNHMIKVGDTVSDMK 188 d1nnla_ 170 ACPPA-DAFIGFGGNVI---------------------------RQQVK-DNAKWYITDF 200 ::::: :::::::: ::::: :::::::::: d1rqla_ 189 EGRNAGMWTVGVIL---GSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFTIETM 245 d1nnla_ 201 VELLG--------- 205 ::: d1rqla_ 246 QEL--ESVMEHIEK 257 TMalign alignment (TM-score: 0.67 Raw score:138.19) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVI-R-EEGIDELAKICGVE-----DA----V---PFKAAL 46 :::::::::::::: : ::::::::: ::: :: : ::::: d1rqla_ 1 --------KIEAVIFDWAGTTVDYGCFAPLEVFM--EIFHKRGVAITAEEARKP-MGLLK 49 d1nnla_ 47 TE-R-------------------------LA-LIQPSREQVQRLIAEQPPHLTPGIRELV 79 :: : :: :::::::::::::: ::::::::::::: d1rqla_ 50 IDHVRALTEMPRIASEWNRVFRQLPTEADIQEMYEEFEEILFAILP-RYASPINAVKEVI 108 d1nnla_ 80 SRLQERNVQVFLISGG---FRSIVEHVAS--KLNIPATNVFANRLKFYFNGEYAGFDETQ 134 :::::::::::::::: :::::::::: ::::: ::::: :: d1rqla_ 109 ASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPD--FLVTP---------------DD 151 d1nnla_ 135 PTAESGGKGKVIKLLKEK-FHFK--KIIMIGDGATDMEA-CPPADAFIGFGGN---V--- 184 ::::::: :::::::::: :::: :::::::::::::: ::::::::::::: : d1rqla_ 152 VPAGRPY-PWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLT 210 d1nnla_ 185 ---------------I--R-QQVKD-NAKWYITDFVELLG------- 205 : : ::::: :::::::::::::: d1rqla_ 211 EEEVENMDSVELREKIEVVRNRFVENGAHFTIETMQELESVMEHIEK 257 HHsearch alignment (Probability: 1.00 E-value:0.00) d1nnla_ 9 SADAVCFDVDSTVIREEGI------DELAKICGVEDAVPFKA---------ALTERLAL- 52 ::::::::::::::::::: ::::::::::::::::: :::::::: d1rqla_ 1 KIEAVIFDWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMP 60 d1nnla_ 53 ---------------------IQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFL 91 ::::::::::::::::::::::::::::::::::::::: d1rqla_ 61 RIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGS 120 d1nnla_ 92 ISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKE 151 :::::::::::::::::::::: :::::: ::::::::::::::::::::: d1rqla_ 121 TTGYTREMMDIVAKEAALQGYK---------PDFLVT--PDDVPAGRPYPWMCYKNAMEL 169 d1nnla_ 152 KFHF-KKIIMIGDGATDMEACPPADAF---IGFGGNVI---------------------- 185 :::: :::::::::::::::::::::: :::::::: d1rqla_ 170 GVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVV 229 d1nnla_ 186 -RQQVKDNAKWYITDFVELL 204 ::::::::::::::::::: d1rqla_ 230 RNRFVENGAHFTIETMQELE 249