Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1vjra_ | Hypothetical protein TM1742 | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 2.144 --> HitDALI alignment (Z-score: 10.6 Raw score:1027.60) d1nnla_ 1 selrKLFYSADAVCFDVDSTVIREegidelakicgvedavpfkaalterlaliqpsreqv 60 :::::::::::::::::::: d1vjra_ 1 ----HVLDKIELFILDMDGTFYLD------------------------------------ 20 d1nnla_ 61 qrliaeqpPHLTPGIRELVSRLQERNVQVFLISGG---FRSIVEHVAS--KLNIPATNVF 115 ::::::::::::::::::::::::::: :::::::::: :::::::::: d1vjra_ 21 --------DSLLPGSLEFLETLKEKNKRFVFFTNNsslGAQDYVRKLRnmGVDVPDDAVV 72 d1nnla_ 116 ANR--------------------------LKFYfnGEYA------gfDETQ--------- 134 ::: :::: :::: :::: d1vjra_ 73 TSGeitaehmlkrfgrcrifllgtpqlkkVFEA-yGHVIdeenpdfvVLGFdktltyerl 131 d1nnla_ 135 -------------ptAESG--------------------------------GKGK--VIK 147 :::: :::: ::: d1vjra_ 132 kkacillrkgkfyiaTHPDincpskegpvpdagsimaaieastgrkpdliaGKPNplVVD 191 d1nnla_ 148 LLKEKFHFK--KIIMIGDG-ATDMEACP-PADAFIGFGGNVIRQQVKD----NAKWYITD 199 ::::::::: :::::::: :::::::: ::::::::::::::::::: :::::::: d1vjra_ 192 VISEKFGVPkeRMAMVGDRlYTDVKLGKnAGIVSILVLTGETTPEDLEraetKPDFVFKN 251 d1nnla_ 200 F-VELLG-- 205 : ::::: d1vjra_ 252 LgELAKAvq 260 FAST alignment (Normalized score: 7.84 Raw score:1811.00) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 :::::::::::::::::: d1vjra_ 1 ----HVLDKIELFILDMDGTFY-------------------------------------- 18 d1nnla_ 61 QRLIAEQP--PHLTPGIRELVSRLQERNVQVFLISGGFRS----IVEHVAS-----KLNI 109 :::::::::::::::::::::::::: ::::::: :::: d1vjra_ 19 --------LDDSLLPGSLEFLETLKEKNKRFVFFTN----NSSLGAQDYVRKLRNMGVDV 66 d1nnla_ 110 PATNVFANRL-------------------------------------------------- 119 ::::::: d1vjra_ 67 PDDAVVT---SGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVIDEENPDFVVLGFD 123 d1nnla_ 120 -KFYFNGEYAGFDETQPTAESGG------------------------------------- 141 ::::: d1vjra_ 124 KTLTYE-----------------RLKKACILLRKGKFYIATHPDINCPSKEGPVPDAGSI 166 d1nnla_ 142 -------------------KGKVIKLLKEKFHF--KKIIMIGD-GATDMEACPPA-DAFI 178 :::::::::::::: :::::::: ::::::::::: :::: d1vjra_ 167 MAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSI 226 d1nnla_ 179 GFGGNVIRQQVKD------------NAKWYITDFVELLG---- 205 ::::: ::::::::::::: d1vjra_ 227 LVLTG--------ETTPEDLERAETKPDFVFKNLGELA-KAVQ 260 TMalign alignment (TM-score: 0.61 Raw score:125.58) d1nnla_ 1 SELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQV 60 :::::::::::::::::::: d1vjra_ 1 ----HVLDKIELFILDMDGTFYLD------------------------------------ 20 d1nnla_ 61 QRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGG--F-RSIVEHVAS--KLNIPATNVF 115 ::::::::::::::::::::::::::: : ::::::::: :::::::::: d1vjra_ 21 --------DSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVV 72 d1nnla_ 116 ANRL-------------------KFYFNGEYAGF---D---------------ETQ---- 134 :::: :::: : ::: d1vjra_ 73 TSGEITAEHMLKRFGRCRIFLLG-------TPQLKKVFEAYGHVIDEENPDFVVLGFDKT 125 d1nnla_ 135 -------------------PTAES--------------------------------GGK- 142 ::::: ::: d1vjra_ 126 LTYERLKKACILLRKGKFYIATHPDINCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKP 185 d1nnla_ 143 -GKVIKLLKEKFHFK--KIIMIGDG-ATDMEAC-PPADAFIGFGGNVIR--QQVKD--NA 193 :::::::::::::: :::::::: ::::::: ::::::::::::::: ::::: :: d1vjra_ 186 NPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKP 245 d1nnla_ 194 KWYITDFVELLG--- 205 :::::::::::: d1vjra_ 246 DFVFKNLGELAKAVQ 260 HHsearch alignment (Probability: 1.00 E-value:0.00) d1nnla_ 131 DETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGA-TDMEACPPADAFIGF---GGNV-- 184 ::::::::::::::::::::::::::::::::::: ::::::::::::::: :::: d1vjra_ 177 KPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPE 236 d1nnla_ 185 IRQQVKDNAKWYITDFVELL 204 :::::::::::::::::::: d1vjra_ 237 DLERAETKPDFVFKNLGELA 256