Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1nnla_ | Phosphoserine phosphatase | HAD-like | HAD-like | α/β |
| Hit | d1ta0a_ | Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 | HAD-like | HAD-like | α/β |
Query <-- 0.606 --> IntermediateDALI alignment (Z-score: 3.0 Raw score:421.70) query 1 dadeevysalvvglrAYVAknGFRSVLIGLSggiDSAL---------------------- 38 :::: :::::::::: :::: d1nnla_ 1 -----------selrKLFY--SADAVCFDVD---STVIreegidelakicgvedavpfka 44 query 39 -----------------------------vaAIACDALG--aqNVYGVSMPskyssdhSK 67 :::::::: :::::::: :: d1nnla_ 45 alterlaliqpsreqvqrliaeqpphltpgiRELVSRLQernvQVFLISGG-------FR 97 query 68 GDAAELARRTGL---NFRT------------------VSIEpmfdaymaslgltglaeen 106 :::::::::::: :::: :::: d1nnla_ 98 SIVEHVASKLNIpatNVFAnrlkfyfngeyagfdetqPTAE------------------- 138 query 107 lqsRLRGTTLMAISNQE----GHIVLAPGnkselavgystlyGDSV------gAYGPiKD 156 :::::::::::::: :::::::: :::: :::: :: d1nnla_ 139 ---SGGKGKVIKLLKEKfhfkKIIMIGDG------------aTDMEacppadaFIGF-GG 182 query 157 VYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgadaivaag 216 :: d1nnla_ 183 NV---------------------------------------------------------- 184 query 217 ydrelvvktlrmvdtaeykRRQY-PPGTkisakgfgkdrrlpitnrwregh 266 :::: :::: d1nnla_ 185 --------------irqqvKDNAkWYIT----------------dfvellg 205 FAST alignment (Normalized score: 1.83 Raw score:427.80) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGI-DSALVAAIACDALGAQN-VYGVSMP 58 :::::::: :::::: d1nnla_ 1 ----------------------------------SELRKLFYS---------ADAVCFD- 16 query 59 S----------------------------------------------------KYSSDHS 66 ::::::: d1nnla_ 17 -VDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGI 75 query 67 KGDAAELARRTGLNFRTVSIE--------------------------------------- 87 :::::::: ::::::::::: d1nnla_ 76 RELVSRLQ-ERNVQVFLISG-GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDET 133 query 88 PMFDAYMASLGLTGLAEENLQS--RLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLY 144 :::: :::::::::::::::: :::: d1nnla_ 134 QPTA------------------ESGGKGKVIKLLKEKFHFKKIIM--------------- 160 query 145 ---------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVL 195 :::::::: d1nnla_ 161 IGDGATDMEACPPADAF------------------------------------------- 177 query 196 DAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRR 255 d1nnla_ 178 ------------------------------------------------------------ 178 query 256 LPITNRWREGH---------------------------- 266 d1nnla_ 178 -----------IGFGGNVIRQQVKDNAKWYITDFVELLG 205 TMalign alignment (TM-score: 0.36 Raw score:94.46) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSA----------------------- 37 :::::::: : :::::::: ::::: d1nnla_ 1 -----------SELRKLFY-S-ADAVCFDV--DSTVIREEGIDELAKICGVEDAVPFKAA 45 query 38 --------------------------L-VAAIACDALGA-QNVYGVSMPSKYSSDHSKGD 69 : ::::::::::: ::::::::: : :::: d1nnla_ 46 LTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISG---G---FRSI 99 query 70 AAELARRTGLNFR-TV-S-------------IEPMF-DAYMASLGLTGLAEENLQSRLRG 113 ::::::::::::: :: : ::::: ::::::: d1nnla_ 100 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPT----------------AESGGKG 143 query 114 TTLMAISNQE-G-HIVLAPGNKSELAVGYSTLYGDSVG----AYGPIKDVYKTSIFRLAE 167 :::::::::: : ::::::: : : :::::: :::::: ::: d1nnla_ 144 KVIKLLKEKFHFKKIIMIGD---G------A-TDMEACPPADAFIGFG-GNV-------- 184 query 168 WRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLR 227 : : d1nnla_ 185 ----------------------------I--R---------------------------- 186 query 228 MVDTAEYKRRQYPPGTKI------SAKGFGKDRRLPITNRWREGH 266 : :: ::: ::::::: d1nnla_ 187 -Q--QV-KDN-AKWYITDFVELLG--------------------- 205 HHsearch alignment (Probability: 0.01 E-value:0.18) query 144 YGDSVGAYGPIK 155 :::::::::::: d1nnla_ 161 IGDGATDMEACP 172
Intermediate <-- 2.193 --> HitDALI alignment (Z-score: 8.8 Raw score:755.10) d1nnla_ 1 -----selrklfysaDAVCFDVDSTVIREegidELAKicgvedavpfkaalterlaliqP 55 :::::::::::::: :::: : d1ta0a_ 1 mqyllpeakaqdsdkICVVIXLDETLVHS----SFKP-----------vnnadfiipveI 45 d1nnla_ 56 SREqvQRLIaeqPPHLTPGIRELVSRLQERnVQVFLISGGFRSIVEHVASKLN--ipaTN 113 ::: :::: :::::::::::::::::: :::::::::::::::::::::: :: d1ta0a_ 46 DGV--VHQV---YVLKRPHVDEFLQRMGEL-FECVLFTASLAKYADPVADLLDkwgafRA 99 d1nnla_ 114 VFANrlkfyfngeyagfdetQPTAE---SGGKGkvIKLLKekFHFKKIIMIGDGATDMEA 170 :::: ::::: ::::: ::::: :::::::::::::::::: d1ta0a_ 100 RLFR----------------ESCVFhrgNYVKD--LSRLG--RDLRRVLILDNSPASYVF 139 d1nnla_ 171 CPpaDAFIGFGGNVirqqvkdnakwyitDFVELLG----------------- 205 :: :::::::::: ::::::: d1ta0a_ 140 HP--DNAVPVASWF--------dnmsdtELHDLLPffeqlsrvddvysvlrq 181 FAST alignment (Normalized score: 5.88 Raw score:1133.00) d1nnla_ 1 SELRKLFYSA---------------DAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAA 45 :::::::::::: d1ta0a_ 1 ----------MQYLLPEAKAQDSDKICVVIALDETLV----------------------- 27 d1nnla_ 46 LTERLALIQPSREQVQRLIAEQ-------------------------PPHLTPGIRELVS 80 ::::::::::::: d1ta0a_ 28 ----------------------HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQ 65 d1nnla_ 81 RLQERNVQVFLISGGFRSIVEHVASKLNIPAT--------NVFANRLKFYFNGEYAGFDE 132 :::: ::::::::::::::::::::: :::: d1ta0a_ 66 RMGE-LFECVLFTASLAKYADPVADL------LDKWGAFRARLF---------------- 102 d1nnla_ 133 TQPTAESGGKGK-------------VIKLLKE-KFHFKKIIMIGDGATDMEACPPAD--- 175 :::: :::::::::::: ::::::: d1ta0a_ 103 ------------RESCVFHRGNYVKDLSR---LGRDLRRVLILDN---SPASYVF--HPD 142 d1nnla_ 176 AFIGFGGNVIRQQVKDNAKWYIT---------DFVELLG------------------ 205 :::::: :::::: d1ta0a_ 143 NAVPVA-----------------SWFDNMSDTELHDLL-PFFEQLSRVDDVYSVLRQ 181 TMalign alignment (TM-score: 0.52 Raw score:107.44) d1nnla_ 1 -------------SELRKLFYSADAVCFDVDSTVIREEGIDELAKI----------CGVE 37 :::::::::::::::: :: :: d1ta0a_ 1 MQYLLPEAKAQDS--------DKICVVIALDETLVHS---SF--KPVNNADFIIPV---- 43 d1nnla_ 38 DAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFR 97 :::::: :: ::::::::::::::::::: ::::::::::: d1ta0a_ 44 ----------------EIDGVV--HQ---VYVLKRPHVDEFLQRMGEL-FECVLFTASLA 81 d1nnla_ 98 SIVEHVAS-KL--NIPATNVFANRLKFYFNGEYAGFDETQPTAES--GGKGKVIKLLKEK 152 :::::::: :: ::: :::::: :::::: ::::: :::: : d1ta0a_ 82 KYADPVADLLDKWGAF-RARLFR----------------ESCVFHRGNYVKD-LSRL-G- 121 d1nnla_ 153 FHFKKIIMIGDGATDMEACPPADAFIGFGGNV----IRQQVKDNAKWYITDFVELLG--- 205 :::::::::::::::::::: :::::::::: ::::::::: d1ta0a_ 122 RDLRRVLILDNSPASYVFHP--DNAVPVASWFDNMS------------DTELHDLLPFFE 167 d1nnla_ 206 -------------- 206 d1ta0a_ 168 QLSRVDDVYSVLRQ 181 HHsearch alignment (Probability: 0.97 E-value:0.00) d1nnla_ 4 RKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVPFKAALTERLALIQPSREQVQRL 63 :::::::::::::::::::::::::: :::: : ::::::::: d1ta0a_ 9 KAQDSDKICVVIXLDETLVHSSFKPV-----NNAD---F------------IIPVEIDGV 48 d1nnla_ 64 IAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYF 123 :::::::::::::::::::: ::::::::::::::::::::::::::: ::::: d1ta0a_ 49 VHQVYVLKRPHVDEFLQRMG-ELFECVLFTASLAKYADPVADLLDKWG--AFRAR----- 100 d1nnla_ 124 NGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIG 179 :::::: ::::: ::::::::::::::::::::::::::::::::::::: d1ta0a_ 101 ---LFRESC---VFHRG--NYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVA 148