Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1vlja_ | NADH-dependent butanol dehydrogenase A (TM0820) | Dehydroquinate synthase-like | Dehydroquinate synthase-like | multi |
| Hit | d1fpza_ | Kinase associated phosphatase (kap) | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 0.611 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:436.20) query 1 ------------dadeeVYSALVVgLRAYVAKNGFRSVLIGLSGGID-saLVAAIACDAL 47 ::::::: :::::::::::::::::::::: :::::::::: d1vlja_ 1 hhhmenfvfhnptkivfGRGTIPK-IGEEIKNAGIRKVLFLYGGGSIkknGVYDQVVDSL 59 query 48 G--aqNVYGVSMpskyssdhskgdaaelarrtglnfrtvsiepmfdaymaslgltglaee 105 : ::::::: d1vlja_ 60 KkhgiEWVEVSG----------------------------------------------vk 73 query 106 nlQSRLRGTTLMAISNQEGH-IVLAPGNkselavgystlygDSVG--------------- 149 :::::::::::::::::: ::::::: :::: d1vlja_ 74 pnPVLSKVHEAVEVAKKEKVeAVLGVGG----------gsvVDSAkavaagalyegdiwd 123 query 150 -------------AYGPIkDVYKtsifrlaewrnraaaergqtppipeasitkpdypvld 196 ::::: :::: d1vlja_ 124 afigkyqiekalpIFDVL-TISA------------------------------------- 145 query 197 ailelyvdrdtgadaivaagydrelvvktlrmvdtaeYKRRQYP-PGTKIS--------- 246 ::::::: :::::: d1vlja_ 146 ---------------tgtemngnavitnektkekygvSSKALYPkVSIIDPsvqftlpke 190 query 247 ------------------------------------------------------------ 247 d1vlja_ 191 qtvygavdaishileyyfdgsspeisneiaegtirtimkmterliekpddyearanlaws 250 query 247 ------------------------------------------------------------ 247 d1vlja_ 251 atialngtmavgrrggewachriehslsalydiahgaglaivfpawmkyvyrknpaqfer 310 query 247 ------------------------------------------------------------ 247 d1vlja_ 311 fakkifgfegegeelilkgieafknwlkkvgapvslkdagipeedidkivdnvmllvekn 370 query 247 --------akgfgkdrrlpitnrwregh 266 d1vlja_ 371 lkpkgaslgrimvleredvreilklaak 398 FAST alignment (Normalized score: 2.06 Raw score:669.30) query 1 DADEEVYSALV----------------------VGLRAYVAKNGFRSVLIGLS------G 32 ::::::::::::::::::: : d1vlja_ 1 -----------HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLY-GGGSIKK 48 query 33 GIDSALVAAIACDALGAQ---NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPM 89 ::::::::::::: ::::: d1vlja_ 49 NGVYDQVVDSLKK-----HGIEWVEV---------------------------------- 69 query 90 FDAYMASLGLTGLAEENLQ-------SRLRGTTLMAISNQEG-HIVLAPGNKSELAVGYS 141 :::::::::::::::: ::::: d1vlja_ 70 -------------------SGVKPNPVLSKVHEAVEVAKKEKVEAVLG------------ 98 query 142 TLY-----GDSVG-----------------------------AYGPIKDVYKTSIFRLAE 167 :::: :::: d1vlja_ 99 ---VGGGSVVDS-AKAVAAGALYEGDIWDAFIGKYQIEKALPIFDV-------------- 140 query 168 WRNRAAAERGQTPPIPEASITKP------------------------------------- 190 d1vlja_ 141 -----------------------LTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVS 177 query 191 --------------------------------------------DYPVLDAILELYVDRD 206 :::::::::::::: d1vlja_ 178 IIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLI-- 235 query 207 TGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1vlja_ 236 ------------------------------------------------------------ 236 query 267 ------------------------------------------------------------ 267 d1vlja_ 236 EKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPA 295 query 267 ------------------------------------------------------------ 267 d1vlja_ 296 WMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEED 355 query 267 ------------------------------------------- 267 d1vlja_ 356 IDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 TMalign alignment (TM-score: 0.39 Raw score:104.91) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS-ALVAAIAC 44 ::::::::::::: ::::::::::::::::::: :::::::: d1vlja_ 1 HHHMENFVFHNPTKI---VFGRGTIPKIGEE-IKNAGIRKVLFLYGGGSIKKNGVYDQVV 56 query 45 DALGA-QNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGL- 102 ::::: :::::::::: : : : d1vlja_ 57 DSLKKHGIEWVEVSGV--K---P-----------------------------------NP 76 query 103 AEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVG------------- 149 ::::::::::::::: : ::::::::: ::: : : :::::: d1vlja_ 77 --VLSKVHEAVEVAKKE-K--VEAVLGVGG-GSV---V-D-SAKAVAAGALYEGDIWDAF 125 query 150 ----------AYGPIKDVYKTS-------------------------------IFRLAEW 168 :::::::::::: ::::::: d1vlja_ 126 IGKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQF 185 query 169 RNRAAAERGQTPPIPEASIT--K-PDYPVLDAILE----------------L-------- 201 : :: : ::::::::::: : d1vlja_ 186 ---------------T--LPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIM 228 query 202 -------------------------YV--DRD--T--GA--------------------- 209 :: ::: : :: d1vlja_ 229 KMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAG 288 query 210 ------------------DA-IVA--A----------------GYD--R------EL--- 221 :: ::: : ::: : : d1vlja_ 289 LAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAP-VSLK 347 query 222 ---------------VVKTLRM--VDT---AEYK--RRQYPPGTKISAKGFGKDRRLPIT 259 : : : ::: d1vlja_ 348 DAGIPEEDIDKIVDN------VML--LVEK---NLK---------------------PKG 375 query 260 NRWREGH---------------- 266 ::::::: d1vlja_ 376 ASLGRIMVLEREDVREILKLAAK 398 HHsearch alignment (Probability: 0.06 E-value:0.07) query 14 LRAYVAKNGFRSVLIGLSGG-IDSALVAAIACDALGAQNVYGVS--MPSKYSSDHSKGDA 70 :::::::::::::::::::: ::::::::::::::::::::::: :::::::::::::: d1vlja_ 25 IGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEA 84 query 71 AELARRTGLNFRT 83 ::::::::::::: d1vlja_ 85 VEVAKKEKVEAVL 97
Intermediate <-- 0.907 --> HitDALI alignment (Z-score: 5.5 Raw score:491.10) d1vlja_ 1 hhhmenfvfhnptKIVF---------------------------GRGTIPKIGEEIKNAG 33 :::: :::::::::::::::: d1fpza_ 1 -------------TPIHiswlslsrvncsqflglcalpgckfkdVRRNVQKDTEELKSCG 47 d1vlja_ 34 IRKVLFLYGgGSIKKNGVYDqVVDSLKKHGIEWVEVSgVKPNPVL--SKVHEAVEVAKKE 91 ::::::::: :::::::::: :::::::::::::::: ::::::: ::::::::::::: d1fpza_ 48 IQDIFVFCTrGELSKYRVPN-LLDLYQQCGIITHHHP-IADGGTPdiASCCEIMEELTTC 105 d1vlja_ 92 K----vEAVLgVGGGsvVDSAKAVAAGALYEGdiwdafigKYQIEkalpifdvltisatg 147 : :::: :::: ::::::::::::::: ::::: d1fpza_ 106 LknyrkTLIH-SYGG--LGRSCLVAACLLLYL------sdTISPE--------qaidslr 148 d1vlja_ 148 teMNGN-AVITNektkekygvsskalypkvsiidpsvqftlpkeqtvygavdaishiley 206 :::: ::::: d1fpza_ 149 dlRGSGaIQTIK------------------------------------------------ 160 d1vlja_ 207 yfdgsspeisneiaegtirtimkmterliekpddyearanlawsatialngtmavgrrgg 266 d1fpza_ 161 ------------------------------------------------------------ 161 d1vlja_ 267 ewachriehslsalydiahgaglaivfpawmkyvyrknpaqferfakkifgfegegeeli 326 d1fpza_ 161 ------------------------------------------------------------ 161 d1vlja_ 327 lkgieafknwlkkvgapvslkdagipeedidkivdnvmllveknlkpkgaslgrimvler 386 d1fpza_ 161 --------------------------------------------------------qyny 164 d1vlja_ 387 edvreilklaak 398 d1fpza_ 165 lhefrdklaahl 176 FAST alignment (Normalized score: 2.64 Raw score:697.80) d1vlja_ 1 HHHMENFVFHNPTKIVF-------------------------------GRGTIPKIGEEI 29 :::::::::::: d1fpza_ 1 -----------------TPIHISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEEL 43 d1vlja_ 30 KNAGIRKVLFLYGG--GSIKKNGVYDQVVDSLKKHGIEWVEVSGVKP------NPVLSKV 81 :::::::::::: :::::::: ::::::::::::::::: ::::::: d1fpza_ 44 KSCGIQDIFVFC--TRGELSKYRV-PNLLDLYQQCGIITHHH-----PIADGGTPDIASC 95 d1vlja_ 82 HEAVEVAKKEKV-------EAVLGV---GGGSVVDSAKAVAAGALYEGDIWDAFIG--KY 129 ::::::::: :::: :::::::::::::::: :: d1fpza_ 96 CEIMEELTT---CLKNYRKTLIH--SYGGLGRSCLVAACLLLYL------------SDTI 138 d1vlja_ 130 QIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPK 189 ::: d1fpza_ 139 SPE--------------------------------------------------------- 141 d1vlja_ 190 EQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEARANLAW 249 d1fpza_ 142 ------------------------------------------------------------ 142 d1vlja_ 250 SATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFE 309 d1fpza_ 142 ------------------------------------------------------------ 142 d1vlja_ 310 RFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEK 369 d1fpza_ 142 ------------------------------------------------------------ 142 d1vlja_ 370 NLKPKGASLGRIMVLEREDVREILKLAAK------------------------------- 398 d1fpza_ 142 -----------------------------QAIDSLRDLRGSGAIQTIKQYNYLHEFRDKL 172 d1vlja_ 399 ---- 399 d1fpza_ 173 AAHL 176 TMalign alignment (TM-score: 0.26 Raw score:103.12) d1vlja_ 1 ---HHHMENFVFHNPT---------------KI-V-----FGRGTIPKIGEEIKNAGIRK 36 ::: :: : :::::::::::::::::::: d1fpza_ 1 TPI----------HISWLSLSRVNCSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQD 50 d1vlja_ 37 VLFLYGGGSIKKN-GVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK-VHE-AVEVAKKEK- 92 :::::: :::::: :::: :::::::::::::::: ::::::::: ::: ::::::::: d1fpza_ 51 IFVFCT-RGELSKYRVPN-LLDLYQQCGIITHHHP-IADGGTPDIASCCEIMEELTTCLK 107 d1vlja_ 93 --VEAVLGVGGGSVVDSAKAVAAGAL-YEGDIWDAFIGKYQIEKALPIFDVLTISATGT- 148 :::::::: : ::::::::::::: :::::::: :::::: : : d1fpza_ 108 NYRKTLIHSY-G-GLGRSCLVAACLLLYLSDTISP-EQAIDS--L-------------RD 149 d1vlja_ 149 EMNGN--AV----ITNEKTK---------EKYGVSSKALYPKVSIIDPSVQFTLPKEQTV 193 ::: :: ::::::: d1fpza_ 150 --LRGSGAIQTIKQYNYLHEFRDKLAAHL------------------------------- 176 d1vlja_ 194 YGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEARANLAWSATI 253 d1fpza_ 177 ------------------------------------------------------------ 177 d1vlja_ 254 ALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAK 313 d1fpza_ 177 ------------------------------------------------------------ 177 d1vlja_ 314 KIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKP 373 d1fpza_ 177 ------------------------------------------------------------ 177 d1vlja_ 374 KGASLGRIMVLEREDVREILKLAAK 398 d1fpza_ 177 ------------------------- 177 HHsearch alignment (Probability: 0.83 E-value:0.00) d1vlja_ 22 IPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVK-PNPVLSK 80 ::::::::::::::::::::::::::::: :::::::::::::::::::::: ::::::: d1fpza_ 36 VQKDTEELKSCGIQDIFVFCTRGELSKYR-VPNLLDLYQQCGIITHHHPIADGGTPDIAS 94 d1vlja_ 81 VHEAVEVAKK---EKVEAVLGVGGGS 103 :::::::::: ::::::::::::: d1fpza_ 95 CCEIMEELTTCLKNYRKTLIHSYGGL 120