Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1vlja_ | NADH-dependent butanol dehydrogenase A (TM0820) | Dehydroquinate synthase-like | Dehydroquinate synthase-like | multi |
| Hit | d1ozha1 | Catabolic acetolactate synthase | DHS-like NAD/FAD-binding domain | DHS-like NAD/FAD-binding domain | α/β |
Query <-- 0.611 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:436.20) query 1 ------------dadeeVYSALVVgLRAYVAKNGFRSVLIGLSGGID-saLVAAIACDAL 47 ::::::: :::::::::::::::::::::: :::::::::: d1vlja_ 1 hhhmenfvfhnptkivfGRGTIPK-IGEEIKNAGIRKVLFLYGGGSIkknGVYDQVVDSL 59 query 48 G--aqNVYGVSMpskyssdhskgdaaelarrtglnfrtvsiepmfdaymaslgltglaee 105 : ::::::: d1vlja_ 60 KkhgiEWVEVSG----------------------------------------------vk 73 query 106 nlQSRLRGTTLMAISNQEGH-IVLAPGNkselavgystlygDSVG--------------- 149 :::::::::::::::::: ::::::: :::: d1vlja_ 74 pnPVLSKVHEAVEVAKKEKVeAVLGVGG----------gsvVDSAkavaagalyegdiwd 123 query 150 -------------AYGPIkDVYKtsifrlaewrnraaaergqtppipeasitkpdypvld 196 ::::: :::: d1vlja_ 124 afigkyqiekalpIFDVL-TISA------------------------------------- 145 query 197 ailelyvdrdtgadaivaagydrelvvktlrmvdtaeYKRRQYP-PGTKIS--------- 246 ::::::: :::::: d1vlja_ 146 ---------------tgtemngnavitnektkekygvSSKALYPkVSIIDPsvqftlpke 190 query 247 ------------------------------------------------------------ 247 d1vlja_ 191 qtvygavdaishileyyfdgsspeisneiaegtirtimkmterliekpddyearanlaws 250 query 247 ------------------------------------------------------------ 247 d1vlja_ 251 atialngtmavgrrggewachriehslsalydiahgaglaivfpawmkyvyrknpaqfer 310 query 247 ------------------------------------------------------------ 247 d1vlja_ 311 fakkifgfegegeelilkgieafknwlkkvgapvslkdagipeedidkivdnvmllvekn 370 query 247 --------akgfgkdrrlpitnrwregh 266 d1vlja_ 371 lkpkgaslgrimvleredvreilklaak 398 FAST alignment (Normalized score: 2.06 Raw score:669.30) query 1 DADEEVYSALV----------------------VGLRAYVAKNGFRSVLIGLS------G 32 ::::::::::::::::::: : d1vlja_ 1 -----------HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLY-GGGSIKK 48 query 33 GIDSALVAAIACDALGAQ---NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPM 89 ::::::::::::: ::::: d1vlja_ 49 NGVYDQVVDSLKK-----HGIEWVEV---------------------------------- 69 query 90 FDAYMASLGLTGLAEENLQ-------SRLRGTTLMAISNQEG-HIVLAPGNKSELAVGYS 141 :::::::::::::::: ::::: d1vlja_ 70 -------------------SGVKPNPVLSKVHEAVEVAKKEKVEAVLG------------ 98 query 142 TLY-----GDSVG-----------------------------AYGPIKDVYKTSIFRLAE 167 :::: :::: d1vlja_ 99 ---VGGGSVVDS-AKAVAAGALYEGDIWDAFIGKYQIEKALPIFDV-------------- 140 query 168 WRNRAAAERGQTPPIPEASITKP------------------------------------- 190 d1vlja_ 141 -----------------------LTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVS 177 query 191 --------------------------------------------DYPVLDAILELYVDRD 206 :::::::::::::: d1vlja_ 178 IIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLI-- 235 query 207 TGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1vlja_ 236 ------------------------------------------------------------ 236 query 267 ------------------------------------------------------------ 267 d1vlja_ 236 EKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPA 295 query 267 ------------------------------------------------------------ 267 d1vlja_ 296 WMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEED 355 query 267 ------------------------------------------- 267 d1vlja_ 356 IDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 TMalign alignment (TM-score: 0.39 Raw score:104.91) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS-ALVAAIAC 44 ::::::::::::: ::::::::::::::::::: :::::::: d1vlja_ 1 HHHMENFVFHNPTKI---VFGRGTIPKIGEE-IKNAGIRKVLFLYGGGSIKKNGVYDQVV 56 query 45 DALGA-QNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGL- 102 ::::: :::::::::: : : : d1vlja_ 57 DSLKKHGIEWVEVSGV--K---P-----------------------------------NP 76 query 103 AEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVG------------- 149 ::::::::::::::: : ::::::::: ::: : : :::::: d1vlja_ 77 --VLSKVHEAVEVAKKE-K--VEAVLGVGG-GSV---V-D-SAKAVAAGALYEGDIWDAF 125 query 150 ----------AYGPIKDVYKTS-------------------------------IFRLAEW 168 :::::::::::: ::::::: d1vlja_ 126 IGKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQF 185 query 169 RNRAAAERGQTPPIPEASIT--K-PDYPVLDAILE----------------L-------- 201 : :: : ::::::::::: : d1vlja_ 186 ---------------T--LPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIM 228 query 202 -------------------------YV--DRD--T--GA--------------------- 209 :: ::: : :: d1vlja_ 229 KMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAG 288 query 210 ------------------DA-IVA--A----------------GYD--R------EL--- 221 :: ::: : ::: : : d1vlja_ 289 LAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAP-VSLK 347 query 222 ---------------VVKTLRM--VDT---AEYK--RRQYPPGTKISAKGFGKDRRLPIT 259 : : : ::: d1vlja_ 348 DAGIPEEDIDKIVDN------VML--LVEK---NLK---------------------PKG 375 query 260 NRWREGH---------------- 266 ::::::: d1vlja_ 376 ASLGRIMVLEREDVREILKLAAK 398 HHsearch alignment (Probability: 0.06 E-value:0.07) query 14 LRAYVAKNGFRSVLIGLSGG-IDSALVAAIACDALGAQNVYGVS--MPSKYSSDHSKGDA 70 :::::::::::::::::::: ::::::::::::::::::::::: :::::::::::::: d1vlja_ 25 IGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEA 84 query 71 AELARRTGLNFRT 83 ::::::::::::: d1vlja_ 85 VEVAKKEKVEAVL 97
Intermediate <-- 1.189 --> HitDALI alignment (Z-score: 4.5 Raw score:435.10) d1vlja_ 1 hhhmenfvfhnptkivfGRGTipkigEEIKNA--GIRKVLFLYGGGSIKKNG--VYDQVV 56 :::: :::::: :::::::::::::::::: :::::: d1ozha1 1 ----------------qMGAApddaiDQVAKLiaQAKNPIFLLGLMASQPENskALRRLL 44 d1vlja_ 57 DSLKkhgieWVEVSGVK---------------pnPVLSkvHEAVEVAKkeKVEAVLGVGG 101 :::: :::::::: :::: :::::::: :::::::::: d1ozha1 45 ETSH-----IPVTSTYQaagavnqdnfsrfagrvGLFN-nQAGDRLLQ--LADLVICIGY 96 d1vlja_ 102 GSvvdsakAVAAgalyegdiwdafigkyqiekALPIFDVLTIsatgtEMNGNAvitnekt 161 :: :::: :::::::::: :::::: d1ozha1 97 SPveyepaMWNS-------------------gNATLVHIDVL----pAYEERN------- 126 d1vlja_ 162 kekygvsskaLYPKVSIIDPsvqftlpkeqtvygavdaishileyyfdgsspeisneiae 221 :::::::::: d1ozha1 127 ----------YTPDVELVGD---------------------------------------- 136 d1vlja_ 222 gtirtimkmterliekpddyearanlawsatialngtmavgrrggewachriehslsaly 281 d1ozha1 137 ------------------------------------------------------------ 137 d1vlja_ 282 diahgaglaivfpawmkyvyrknpaqferfakkifgfegegeelilkgieafknwlkkvg 341 d1ozha1 137 ------------------------------------------------------------ 137 d1vlja_ 342 apvslkdagipeedidkivdnvmllveknlkpkgaslgrimvleredvreilklaak 398 d1ozha1 137 ---------------iagtlnklaqnidhrlvlspqaaeilrdrqhqrelldrgaql 178 FAST alignment (Normalized score: 2.14 Raw score:568.50) d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKI---------GEEIKN--AGIRKVLFLYGGGSIKK- 48 :::::: ::::::::::: d1ozha1 1 -------------------------QMGAAPDDAIDQVAKLIAQAKNPIFLLG------L 29 d1vlja_ 49 ----NGVYDQVVDSLKKHGIEWVEVSGVKPN----------------------PVLSKVH 82 ::::::::::::::: :::: :::: : d1ozha1 30 MASQPENSKALRRLLETSH--IPVT------STYQAAGAVNQDNFSRFAGRVGLFNN--Q 79 d1vlja_ 83 EAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEK--------- 133 ::::::: :::::::: d1ozha1 80 AGDRLLQ--LADLVICI----------------------------------GYSPVEYEP 103 d1vlja_ 134 ------ALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVS----SKALYPKVSIIDPSV 183 :::::::::: :::::::::: d1ozha1 104 AMWNSGNATLVHIDVL-------------------------PAYEERNYTPDVEL----- 133 d1vlja_ 184 QFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEA 243 d1ozha1 134 ------------------------------------------------------------ 134 d1vlja_ 244 RANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRK 303 d1ozha1 134 ------------------------------------------------------------ 134 d1vlja_ 304 NPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNV 363 d1ozha1 134 ------------------------------------------------------------ 134 d1vlja_ 364 MLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK------------------------- 398 d1ozha1 134 -----------------------------------VGDIAGTLNKLAQNIDHRLVLSPQA 158 d1vlja_ 399 -------------------- 399 d1ozha1 159 AEILRDRQHQRELLDRGAQL 178 TMalign alignment (TM-score: 0.24 Raw score:95.52) d1vlja_ 1 -HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNA--GIRKVLFLYGGGSIKKNGVYDQVVD 57 ::::::::::::::: ::::::::::::::::::::::::: d1ozha1 1 Q-----------------MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRL 43 d1vlja_ 58 SLKKHGIEWVEVSGVKP---------------NPVLSKVHE-AVEVAKKEKVEAVLGVGG 101 ::: ::::::::::: ::::::: :::::: :::::::::: d1ozha1 44 LET---SHIPVTSTYQAAGAVNQDNFSRFAGR--VGLFNNQAGDRLLQ--LADLVICIGY 96 d1vlja_ 102 GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEKT 161 :::::::::::: :::::::::::: :: : : d1ozha1 97 SPVEYEPAMWNS-------------------GNATLVHIDVLP--AY--E-E-------- 124 d1vlja_ 162 KEKYGVSSKALYPKVSIIDPSVQ------------------------------------- 184 :: ::::::::: ::: d1ozha1 125 ------RN--YTPDVELVG-DIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRG 175 d1vlja_ 185 ---FTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDDY 241 d1ozha1 176 AQL--------------------------------------------------------- 178 d1vlja_ 242 EARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVY 301 d1ozha1 179 ------------------------------------------------------------ 179 d1vlja_ 302 RKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVD 361 d1ozha1 179 ------------------------------------------------------------ 179 d1vlja_ 362 NVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 d1ozha1 179 ------------------------------------- 179 HHsearch alignment (Probability: 0.84 E-value:0.00) d1vlja_ 19 RGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVE 68 ::::::::::::: ::::::::::::: ::::::::::::::::::::: d1ozha1 7 DDAIDQVAKLIAQ--AKNPIFLLGLMAS-QPENSKALRRLLETSHIPVTS 53