Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1vlja_ | NADH-dependent butanol dehydrogenase A (TM0820) | Dehydroquinate synthase-like | Dehydroquinate synthase-like | multi |
| Hit | d1jsca1 | Acetohydroxyacid synthase catalytic subunit | DHS-like NAD/FAD-binding domain | DHS-like NAD/FAD-binding domain | α/β |
Query <-- 0.611 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:436.20) query 1 ------------dadeeVYSALVVgLRAYVAKNGFRSVLIGLSGGID-saLVAAIACDAL 47 ::::::: :::::::::::::::::::::: :::::::::: d1vlja_ 1 hhhmenfvfhnptkivfGRGTIPK-IGEEIKNAGIRKVLFLYGGGSIkknGVYDQVVDSL 59 query 48 G--aqNVYGVSMpskyssdhskgdaaelarrtglnfrtvsiepmfdaymaslgltglaee 105 : ::::::: d1vlja_ 60 KkhgiEWVEVSG----------------------------------------------vk 73 query 106 nlQSRLRGTTLMAISNQEGH-IVLAPGNkselavgystlygDSVG--------------- 149 :::::::::::::::::: ::::::: :::: d1vlja_ 74 pnPVLSKVHEAVEVAKKEKVeAVLGVGG----------gsvVDSAkavaagalyegdiwd 123 query 150 -------------AYGPIkDVYKtsifrlaewrnraaaergqtppipeasitkpdypvld 196 ::::: :::: d1vlja_ 124 afigkyqiekalpIFDVL-TISA------------------------------------- 145 query 197 ailelyvdrdtgadaivaagydrelvvktlrmvdtaeYKRRQYP-PGTKIS--------- 246 ::::::: :::::: d1vlja_ 146 ---------------tgtemngnavitnektkekygvSSKALYPkVSIIDPsvqftlpke 190 query 247 ------------------------------------------------------------ 247 d1vlja_ 191 qtvygavdaishileyyfdgsspeisneiaegtirtimkmterliekpddyearanlaws 250 query 247 ------------------------------------------------------------ 247 d1vlja_ 251 atialngtmavgrrggewachriehslsalydiahgaglaivfpawmkyvyrknpaqfer 310 query 247 ------------------------------------------------------------ 247 d1vlja_ 311 fakkifgfegegeelilkgieafknwlkkvgapvslkdagipeedidkivdnvmllvekn 370 query 247 --------akgfgkdrrlpitnrwregh 266 d1vlja_ 371 lkpkgaslgrimvleredvreilklaak 398 FAST alignment (Normalized score: 2.06 Raw score:669.30) query 1 DADEEVYSALV----------------------VGLRAYVAKNGFRSVLIGLS------G 32 ::::::::::::::::::: : d1vlja_ 1 -----------HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLY-GGGSIKK 48 query 33 GIDSALVAAIACDALGAQ---NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPM 89 ::::::::::::: ::::: d1vlja_ 49 NGVYDQVVDSLKK-----HGIEWVEV---------------------------------- 69 query 90 FDAYMASLGLTGLAEENLQ-------SRLRGTTLMAISNQEG-HIVLAPGNKSELAVGYS 141 :::::::::::::::: ::::: d1vlja_ 70 -------------------SGVKPNPVLSKVHEAVEVAKKEKVEAVLG------------ 98 query 142 TLY-----GDSVG-----------------------------AYGPIKDVYKTSIFRLAE 167 :::: :::: d1vlja_ 99 ---VGGGSVVDS-AKAVAAGALYEGDIWDAFIGKYQIEKALPIFDV-------------- 140 query 168 WRNRAAAERGQTPPIPEASITKP------------------------------------- 190 d1vlja_ 141 -----------------------LTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVS 177 query 191 --------------------------------------------DYPVLDAILELYVDRD 206 :::::::::::::: d1vlja_ 178 IIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLI-- 235 query 207 TGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1vlja_ 236 ------------------------------------------------------------ 236 query 267 ------------------------------------------------------------ 267 d1vlja_ 236 EKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPA 295 query 267 ------------------------------------------------------------ 267 d1vlja_ 296 WMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEED 355 query 267 ------------------------------------------- 267 d1vlja_ 356 IDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 TMalign alignment (TM-score: 0.39 Raw score:104.91) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS-ALVAAIAC 44 ::::::::::::: ::::::::::::::::::: :::::::: d1vlja_ 1 HHHMENFVFHNPTKI---VFGRGTIPKIGEE-IKNAGIRKVLFLYGGGSIKKNGVYDQVV 56 query 45 DALGA-QNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGL- 102 ::::: :::::::::: : : : d1vlja_ 57 DSLKKHGIEWVEVSGV--K---P-----------------------------------NP 76 query 103 AEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVG------------- 149 ::::::::::::::: : ::::::::: ::: : : :::::: d1vlja_ 77 --VLSKVHEAVEVAKKE-K--VEAVLGVGG-GSV---V-D-SAKAVAAGALYEGDIWDAF 125 query 150 ----------AYGPIKDVYKTS-------------------------------IFRLAEW 168 :::::::::::: ::::::: d1vlja_ 126 IGKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQF 185 query 169 RNRAAAERGQTPPIPEASIT--K-PDYPVLDAILE----------------L-------- 201 : :: : ::::::::::: : d1vlja_ 186 ---------------T--LPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIM 228 query 202 -------------------------YV--DRD--T--GA--------------------- 209 :: ::: : :: d1vlja_ 229 KMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAG 288 query 210 ------------------DA-IVA--A----------------GYD--R------EL--- 221 :: ::: : ::: : : d1vlja_ 289 LAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAP-VSLK 347 query 222 ---------------VVKTLRM--VDT---AEYK--RRQYPPGTKISAKGFGKDRRLPIT 259 : : : ::: d1vlja_ 348 DAGIPEEDIDKIVDN------VML--LVEK---NLK---------------------PKG 375 query 260 NRWREGH---------------- 266 ::::::: d1vlja_ 376 ASLGRIMVLEREDVREILKLAAK 398 HHsearch alignment (Probability: 0.06 E-value:0.07) query 14 LRAYVAKNGFRSVLIGLSGG-IDSALVAAIACDALGAQNVYGVS--MPSKYSSDHSKGDA 70 :::::::::::::::::::: ::::::::::::::::::::::: :::::::::::::: d1vlja_ 25 IGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEA 84 query 71 AELARRTGLNFRT 83 ::::::::::::: d1vlja_ 85 VEVAKKEKVEAVL 97
Intermediate <-- 1.611 --> HitDALI alignment (Z-score: 4.7 Raw score:470.20) d1vlja_ 1 hhhmenfvfhnptkivFGRGtipKIGEEIKnaGIRKVLFLYGgGSIKKN-GVYDQVVDSL 59 :::: ::::::: :::::::::: :::::: :::::::::: d1jsca1 1 ------------aqdeFVMQsinKAADLIN--LAKKPVLYVG-AGILNHaDGPRLLKELS 45 d1vlja_ 60 KKhgIEWVEVSGVK-------------pnpVLSKVHEAVEVAKkeKVEAVLGVGggsVVD 106 :: :::::::::: ::::::::::::: ::::::::: ::: d1jsca1 46 DR--AQIPVTTTLQglgsfdqedpksldmlGMHGCATANLAVQ--NADLIIAVG---ARF 98 d1vlja_ 107 S---akavaAGALyegdiwdafigkyqiekalPIFDVLtISATGtEMNGnavitnektke 163 : :::: :::::: ::::: :::: d1jsca1 99 DdrvtgnisKFAP--------earraaaegrgGIIHFE-VSPKN-INKV----------- 137 d1vlja_ 164 kygvsskaLYPKVSIIDpsvqftlpkeqtvygavdaishileyyfdgsspeisneiaegt 223 ::::::::: d1jsca1 138 --------VQTQIAVEG------------------------------------------- 146 d1vlja_ 224 irtimkmterliekpddyearanlawsatialngtmavgrrggewachriehslsalydi 283 d1jsca1 147 ------------------------------------------------------------ 147 d1vlja_ 284 ahgaglaivfpawmkyvyrknpaqferfakkifgfegegeelilkgieafknwlkkvgap 343 d1jsca1 147 ------------------------------------------------------------ 147 d1vlja_ 344 vslkdagipeedidkivdnvmllveknlkpkgaslgrimvleredvreilklaak 398 d1jsca1 147 --------------------dattnlgkmmskifpvkersewfaqinkwkkeypy 181 FAST alignment (Normalized score: 2.60 Raw score:697.20) d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKI---------GEEIKN--AGIRKVLFLYGGGSIKK- 48 :::::: ::::::::::: :::: d1jsca1 1 -------------------------AQDEFVMQSINKAADLINLAKKPVLYVG-AGIL-N 33 d1vlja_ 49 -NGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK------------------------VHE 83 ::::::::::::: :::::: ::: d1jsca1 34 HADGPRLLKELSDR--AQIPVT-----------TTLQGLGSFDQEDPKSLDMLGMHGCAT 80 d1vlja_ 84 AVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGK-------YQIEKAL- 135 :::::: :::::::::: ::::: d1jsca1 81 ANLAVQ--NADLIIAVGA---------------------------RFDDRVTGNISK--F 109 d1vlja_ 136 -------------PIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKA--LYPKVSIID 180 ::::::::: :::: ::::::: d1jsca1 110 APEARRAAAEGRGGIIHFEVSP--KNIN---------------------KVVQTQIAV-- 144 d1vlja_ 181 PSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD 240 d1jsca1 145 ------------------------------------------------------------ 145 d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYV 300 d1jsca1 145 ------------------------------------------------------------ 145 d1vlja_ 301 YRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIV 360 d1jsca1 145 ------------------------------------------------------------ 145 d1vlja_ 361 DNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK---------------------- 398 d1jsca1 145 --------------------------------------EGDATTNLGKMMSKIFPVKERS 166 d1vlja_ 399 --------------- 399 d1jsca1 167 EWFAQINKWKKEYPY 181 TMalign alignment (TM-score: 0.24 Raw score:96.64) d1vlja_ 1 ---HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVD 57 ::::::: ::::::::: :::::::::::::: :::::::::: d1jsca1 1 AQD--------------EFVMQSI-NKAADLINL-AKKPVLYVGAGILN-HADGPRLLKE 43 d1vlja_ 58 SLKKHGIEWVEVSGVK-------------PNPVLSKVHEAVE-VAKKEKVE-AVLGVGGG 102 :::: ::::::::::: :::::::: :::::::: :::::: d1jsca1 44 LSDR-AQIPVTTTLQGLGSFDQEDPKSLD-----MLGMHGCATANLAVQNADLIIAVG-- 95 d1vlja_ 103 SVVDSAKAVAAGALYEGDIWDAFIGKYQIEKA--L---------PIFDVLTISATGTEMN 151 :::::::: : : : :::: : :::::: :::: :: : d1jsca1 96 -ARFDDRVT--G------N--I------SKFAPEARRAAAEGRGGIIHFE-VSPK-NI-N 135 d1vlja_ 152 GNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQ--------------------------- 184 :: ::::::::::::: d1jsca1 136 -KV-----------------VQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKK 177 d1vlja_ 185 ----FTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD 240 d1jsca1 178 EYPY-------------------------------------------------------- 181 d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYV 300 d1jsca1 182 ------------------------------------------------------------ 182 d1vlja_ 301 YRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIV 360 d1jsca1 182 ------------------------------------------------------------ 182 d1vlja_ 361 DNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 d1jsca1 182 -------------------------------------- 182 HHsearch alignment (Probability: 0.88 E-value:0.00) d1vlja_ 17 FGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGV---- 72 ::::::::::::::: ::::::::::::::::::::::::::::::::::::::: d1jsca1 5 FVMQSINKAADLINL--AKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSF 62 d1vlja_ 73 -KPNPVLSKV-----HEAVEVAKKEKVEAVLGVGG 101 ::::::::: :::::::: ::::::::::: d1jsca1 63 DQEDPKSLDMLGMHGCATANLAV-QNADLIIAVGA 96