Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t57a_ | Hypothetical protein MTH1675 | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
| Hit | d1k1ea_ | Probable phosphatase YrbI | HAD-like | HAD-like | α/β |
Query <-- 0.668 --> IntermediateDALI alignment (Z-score: 4.8 Raw score:501.90) query 1 ---------dadeeVYSALVVGLRAYVAKNGFRSVLIGLSGgidsALVAAIACDALGaQN 51 ::::::::::::::::::::::::::: :::::::::::: :: d1t57a_ 1 mekkicyfeepgkeNTERVLELVGERADQLGIRNFVVASVS----GETALRLSEMVE-GN 55 query 52 VYGVSMPSK---YSSDhSKGD-AAELARRTGLNFRTVSI--ePMFDAYMASLGLtglaEE 105 ::::::::: :::: :::: ::::::::::::::::: :::::::::::: :: d1t57a_ 56 IVSVTHHAGfreKGQL-ELEDeARDALLERGVNVYAGSHalsGVGRGISNRFGG---vTP 111 query 106 NL----------qsrlrgTTLMAISNQ-------eGHIVLAPGnkselavgystlygdsV 148 :: ::::::::: :::::::: : d1t57a_ 112 VEimaetlrmvsqgfkvcVEIAIMAADaglipvdeEVIAIGGT-----------awgadT 160 query 149 GAYgpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 208 ::: d1t57a_ 161 ALV--------------------------------------------------------- 163 query 209 adaivaagydrelvvktlrmvdtaeykrrqyPPGTkisakgfgkdrrlpitnrwregh 266 :::: d1t57a_ 164 ----------------ltpahmnsvfdlrihEVIA-------------------mprp 186 FAST alignment (Normalized score: 3.32 Raw score:738.10) query 1 DAD------------EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS--ALVAAIACDA 46 ::::::::::::::::::::::::::: :::::::::: d1t57a_ 1 ---MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVAS------VSGETALRLSEM 51 query 47 LGAQ--NVYGVSMPSKYSSDH-------------SKGDAAELARRTGLNFRTVSI----- 86 : :::::: ::::::::: ::::::::: d1t57a_ 52 V---EGNIVSVT---------HHAGFREKGQLELEDEARDALL-ERGVNVYAG--SHALS 96 query 87 EPMFDAYMASLGLTGLAEENLQ-----------------------SRLRGTTLMAI---- 119 ::::::::: :::::::::: d1t57a_ 97 GVGRGISNR-------------FGGVTPVEIMAETLRMVSQGFKVCVEIAIMAAD-AGLI 142 query 120 SNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQT 179 :::::::::: d1t57a_ 143 PVDEEVIAIG-------------------------------------------------- 152 query 180 PPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQY 239 d1t57a_ 153 ------------------------------------------------------------ 153 query 240 PPGTKISAKGFGKDRRLPITNRWREGH--------------------------------- 266 d1t57a_ 153 ---------------------------GTAWGADTALVLTPAHMNSVFDLRIHEVIAMPR 185 query 267 - 267 d1t57a_ 186 P 186 TMalign alignment (TM-score: 0.36 Raw score:96.37) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACD 45 :::::::::::::::::::::::::: :: ::::::: d1t57a_ 1 MEKKICYFEEPGKEN------TERVLELVGERADQLGIRNFVVASVS---GE-TALRLSE 50 query 46 ALGAQNVYGVSMPSKYSS--DHSKGD-AAELARRTGLNFRTVSIEPMFDAYMASL-GLTG 101 ::: :::::::::::::: :::::: :::::::::::::::::::::::::::: ::: d1t57a_ 51 MVE-GNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGG- 108 query 102 LAE--ENL--QSRL---------RG-TTLMA--I----SNQE-GHIVLAPGNKSELAVGY 140 :: : :: :: ::::: : :::: :::::::: d1t57a_ 109 -VTPV--EIM--AETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGT--------- 154 query 141 STLYGDSVGAY----------------GPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPE 184 ::: :::::: d1t57a_ 155 -AWG-ADTALVLTPAHMNSVFDLRIHE--------------------------------- 179 query 185 ASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK 244 :::: d1t57a_ 180 ------------------------------------------------------VIAM-- 183 query 245 ISAKGFGKDRRLPITNRWREGH 266 : : : d1t57a_ 184 -----P-R-----P-------- 186 HHsearch alignment (Probability: 0.08 E-value:0.04) query 16 AYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELAR 75 :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::: d1t57a_ 25 ERADQLGIRNFVVASVSG----ETALRLSEMV-EGNIVSVTHHAGFREKGQLELEDEARD 79 query 76 RT 77 :: d1t57a_ 80 AL 81
Intermediate <-- 0.663 --> HitDALI alignment (Z-score: 2.8 Raw score:341.50) d1t57a_ 1 mekkicyfeepgkentervlelvgeradqLGIRNFVVASV-------------------s 41 ::::::::::: d1k1ea_ 1 ---------------------------klENIKFVITDVDgvltdgqlhydangeaiksf 33 d1t57a_ 42 getaLRLSEMVE---GNIVSVTHHagfrekgqleLEDEARDALLERGV-NVYAGSHAlsg 97 :::::::: ::::::::: :::::::::::::: :::::::: d1k1ea_ 34 hvrdGLGIKMLMdadIQVAVLSGR----------DSPILRRRIADLGIkLFFLGKLE--- 80 d1t57a_ 98 vgrgisnrfggvtpveimaetlrmvsqgfkvcveiaIMAAdaGLIP----vdEEVIAIGG 153 :::: :::: :::::::: d1k1ea_ 81 ----------------------------------keTACF--DLMKqagvtaEQTAYIGD 104 d1t57a_ 154 TA--wgadtalvltpahmnsvfdlrihEVIAMPR-------------------------- 185 :: ::::::: d1k1ea_ 105 DSvdlpafaacgtsfavadapiyvknaVDHVLSThggkgafremsdmilqaqgkssvfdt 164 d1t57a_ 186 ------------p 186 d1k1ea_ 165 aqgflksvksmgq 177 FAST alignment (Normalized score: 1.99 Raw score:361.00) d1t57a_ 1 MEKKICYFEEPGKEN---------------------------------TERVLELVGERA 27 :::::::::::: d1k1ea_ 1 ---------------KLENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLM 45 d1t57a_ 28 DQLGI--RNFVVASVS--GETALRLSEMVEGN---IVSVTHHAGFREKGQLELEDEARDA 80 : ::::::::: ::::::::: :::: d1k1ea_ 46 D----ADIQVAVLSGRDSPILRRRIAD-----LGIKLFF--------------------- 75 d1t57a_ 81 LLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVS----QGFKVCVEIAIMA 136 :::::::::::: d1k1ea_ 76 -------------------------------------------LGKLEKETACFDLMKQ- 91 d1t57a_ 137 ADAG-LIPVDEEVIAIGGTAWGADTALVLTPAHMNSVFDL-----------RIHEVIAMP 184 ::::: ::::: :::: :::: d1k1ea_ 92 ----AGVTAE-QTAYI------------------------GDDSVDLPAFAACGT-SFAV 121 d1t57a_ 185 RP------------------------------------------------------- 186 : d1k1ea_ 122 A-DAPIYVKNAVDHVLSTHGGKGAFREMSDMILQAQGKSSVFDTAQGFLKSVKSMGQ 177 TMalign alignment (TM-score: 0.38 Raw score:70.84) d1t57a_ 1 MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGET--------------AL 46 :: ::::::::::::::: :: d1k1ea_ 1 -------------------------KL--ENIKFVITDVDGVLTDGQLHYDANGEAIKSF 33 d1t57a_ 47 R--LSEMV--EG----NIVSVTHHAGFREKGQLELEDEARDALLERGVN-VYAGSHALSG 97 : ::::: :: ::::::: :::::::::::::::: ::::::: d1k1ea_ 34 HVRDGLGIKMLMDADIQVAVLSG----------RDSPILRRRIADLGIKLFFLGKLE--- 80 d1t57a_ 98 VGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGTAWG 157 : ::::::::: ::::::::::::::::: d1k1ea_ 81 ------------------------------K-ETACFDLMK-QAGVTAEQTAYIGDDSV- 107 d1t57a_ 158 ADTALVLTPAHMNSVFDLRIHEVIA-------MPRP------------------------ 186 ::::: : : :::::: :::: d1k1ea_ 108 DLPAF-A----------A-CGTSFAVADAPIYVKNAVDHVLSTHGGKGAFREMSDMILQA 155 d1t57a_ 187 ---------------------- 187 d1k1ea_ 156 QGKSSVFDTAQGFLKSVKSMGQ 177 HHsearch alignment (Probability: 0.04 E-value:0.07) d1t57a_ 5 ICYFEEPGKEN----TERVLELVGERADQLGIRNFVVASVSGETALRLSEMVE 53 ::::::::::: ::: ::::::::::::::::::::::::::::::::: d1k1ea_ 20 QLHYDANGEAIKSFHVRD--GLGIKMLMDADIQVAVLSGRDSPILRRRIADLG 70