Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t57a_ | Hypothetical protein MTH1675 | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
| Hit | d1tvza1 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS | Thiolase-like | Thiolase-like | α/β |
Query <-- 0.668 --> IntermediateDALI alignment (Z-score: 4.8 Raw score:501.90) query 1 ---------dadeeVYSALVVGLRAYVAKNGFRSVLIGLSGgidsALVAAIACDALGaQN 51 ::::::::::::::::::::::::::: :::::::::::: :: d1t57a_ 1 mekkicyfeepgkeNTERVLELVGERADQLGIRNFVVASVS----GETALRLSEMVE-GN 55 query 52 VYGVSMPSK---YSSDhSKGD-AAELARRTGLNFRTVSI--ePMFDAYMASLGLtglaEE 105 ::::::::: :::: :::: ::::::::::::::::: :::::::::::: :: d1t57a_ 56 IVSVTHHAGfreKGQL-ELEDeARDALLERGVNVYAGSHalsGVGRGISNRFGG---vTP 111 query 106 NL----------qsrlrgTTLMAISNQ-------eGHIVLAPGnkselavgystlygdsV 148 :: ::::::::: :::::::: : d1t57a_ 112 VEimaetlrmvsqgfkvcVEIAIMAADaglipvdeEVIAIGGT-----------awgadT 160 query 149 GAYgpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 208 ::: d1t57a_ 161 ALV--------------------------------------------------------- 163 query 209 adaivaagydrelvvktlrmvdtaeykrrqyPPGTkisakgfgkdrrlpitnrwregh 266 :::: d1t57a_ 164 ----------------ltpahmnsvfdlrihEVIA-------------------mprp 186 FAST alignment (Normalized score: 3.32 Raw score:738.10) query 1 DAD------------EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS--ALVAAIACDA 46 ::::::::::::::::::::::::::: :::::::::: d1t57a_ 1 ---MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVAS------VSGETALRLSEM 51 query 47 LGAQ--NVYGVSMPSKYSSDH-------------SKGDAAELARRTGLNFRTVSI----- 86 : :::::: ::::::::: ::::::::: d1t57a_ 52 V---EGNIVSVT---------HHAGFREKGQLELEDEARDALL-ERGVNVYAG--SHALS 96 query 87 EPMFDAYMASLGLTGLAEENLQ-----------------------SRLRGTTLMAI---- 119 ::::::::: :::::::::: d1t57a_ 97 GVGRGISNR-------------FGGVTPVEIMAETLRMVSQGFKVCVEIAIMAAD-AGLI 142 query 120 SNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQT 179 :::::::::: d1t57a_ 143 PVDEEVIAIG-------------------------------------------------- 152 query 180 PPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQY 239 d1t57a_ 153 ------------------------------------------------------------ 153 query 240 PPGTKISAKGFGKDRRLPITNRWREGH--------------------------------- 266 d1t57a_ 153 ---------------------------GTAWGADTALVLTPAHMNSVFDLRIHEVIAMPR 185 query 267 - 267 d1t57a_ 186 P 186 TMalign alignment (TM-score: 0.36 Raw score:96.37) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACD 45 :::::::::::::::::::::::::: :: ::::::: d1t57a_ 1 MEKKICYFEEPGKEN------TERVLELVGERADQLGIRNFVVASVS---GE-TALRLSE 50 query 46 ALGAQNVYGVSMPSKYSS--DHSKGD-AAELARRTGLNFRTVSIEPMFDAYMASL-GLTG 101 ::: :::::::::::::: :::::: :::::::::::::::::::::::::::: ::: d1t57a_ 51 MVE-GNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGG- 108 query 102 LAE--ENL--QSRL---------RG-TTLMA--I----SNQE-GHIVLAPGNKSELAVGY 140 :: : :: :: ::::: : :::: :::::::: d1t57a_ 109 -VTPV--EIM--AETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGT--------- 154 query 141 STLYGDSVGAY----------------GPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPE 184 ::: :::::: d1t57a_ 155 -AWG-ADTALVLTPAHMNSVFDLRIHE--------------------------------- 179 query 185 ASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK 244 :::: d1t57a_ 180 ------------------------------------------------------VIAM-- 183 query 245 ISAKGFGKDRRLPITNRWREGH 266 : : : d1t57a_ 184 -----P-R-----P-------- 186 HHsearch alignment (Probability: 0.08 E-value:0.04) query 16 AYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELAR 75 :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::: d1t57a_ 25 ERADQLGIRNFVVASVSG----ETALRLSEMV-EGNIVSVTHHAGFREKGQLELEDEARD 79 query 76 RT 77 :: d1t57a_ 80 AL 81
Intermediate <-- 0.926 --> HitDALI alignment (Z-score: 3.2 Raw score:316.40) d1t57a_ 1 ----mekkiCYFEE-------------------------------pgkENTERVLELVGE 25 ::::: :::::::::::: d1tvza1 1 tigidkinfYVPKYyvdmaklaearqvdpnkfligigqtemavspvnqDIVSMGANAAKD 60 d1t57a_ 26 RADQLGI---RNFVVA-----svSGETALRLSEMVE----GNIVSVTHhagfrekgqlel 73 ::::::: :::::: ::::::::::::: :::::::: d1tvza1 61 IITDEDKkkiGMVIVAtesavdaAKAAAVQIHNLLGiqpfARCFEMKE------------ 108 d1t57a_ 74 edeardallergvnvyagshalsgvgrgisnrfggvtpveimaetlrmvsqgfKVCVEIA 133 ::::::: d1tvza1 109 ---------------------------------------------------axYAATPAI 117 d1t57a_ 134 IMAADaglIPVD---EEVIAIGGT-------------awgaDTALVLTpahmnsvfdlri 177 ::::: :::: ::::::::: ::::::: d1tvza1 118 QLAKD---YLATrpnEKVLVIATDtaryglnsggeptqgagAVAMVIA------------ 162 d1t57a_ 178 heviamprp 186 d1tvza1 163 -----hnps 166 FAST alignment (Normalized score: 2.54 Raw score:447.00) d1t57a_ 1 MEKKICYFEEPGK----------------------------------------------- 13 d1tvza1 1 -------------TIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVN 47 d1t57a_ 14 -ENTERVLELVGERADQL-------GIRNFVVASVSG------ETALRLSEMVE-----G 54 ::::::::::::: ::::::::::: :::::::::: : d1tvza1 48 QDIVSMGANAAKDI----ITDEDKKKIGMVIVATES-AVDAAKAAAVQIHNLL-GIQPFA 101 d1t57a_ 55 NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEI 114 ::::: d1tvza1 102 RCFEM------------------------------------------------------- 106 d1t57a_ 115 MAETLRMV---SQGFKVCVEIAIMAADAGLIPV----DEEVIAIGGTAWGA--------- 158 ::::::::::::::: :::::::: d1tvza1 107 --------KEAAYAATPAIQLAKDYL-------ATRPNEKVLVIA------TDTARYGLN 145 d1t57a_ 159 ----------DTALVLTPAHMNSVFDLRIHEVIAMPRP------ 186 ::::: d1tvza1 146 SGGEPTQGAGAVAMV-----------------------IAHNPS 166 TMalign alignment (TM-score: 0.31 Raw score:58.46) d1t57a_ 1 ---MEKKICYFEEPGKE---------------------------------------NTER 18 :: : :::: d1tvza1 1 TIG----ID-K--INFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQD---- 49 d1t57a_ 19 VLELVGERADQLGIRNFVVASVS--GE--TALRLSEMVEGNI-VSVTHHAGFRE-KGQLE 72 :: :: ::::::::::::: :::::: ::: ::::: d1tvza1 50 ---------------------IVSMGANAAKDIITDEDKKKIGMVIVAT--ESAVDAAKA 86 d1t57a_ 73 LEDEARDALLERGV-NVYAGSHALSGVGR-GISNRFGGVTPVEIMAETLRMVSQGFKVCV 130 ::::::::: :::: ::::::: : : : : :: :::: d1tvza1 87 AAVQIHNLL-GIQPFARCFEMK--E---AA------------Y--A-------AT-PAIQ 118 d1t57a_ 131 EIAIMAADAGLIPVDEE-VIAIGGTA------------------WGADTALVLTPAHMNS 171 :::: : ::::: :::::::: ::: ::::: d1tvza1 119 LAKD--Y-----LATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVA-MVIAH------- 163 d1t57a_ 172 VFDLRIHEVIAMPRP 186 ::: d1tvza1 164 -------NPS----- 166 HHsearch alignment (Probability: 0.02 E-value:0.08) d1t57a_ 28 DQLGIRNFVVASVSGETA 45 :::::::::::::::::: d1tvza1 34 IGIGQTEMAVSPVNQDIV 51