Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t57a_ | Hypothetical protein MTH1675 | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
| Hit | d1a3wa3 | Pyruvate kinase, C-terminal domain | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
Query <-- 0.668 --> IntermediateDALI alignment (Z-score: 4.8 Raw score:501.90) query 1 ---------dadeeVYSALVVGLRAYVAKNGFRSVLIGLSGgidsALVAAIACDALGaQN 51 ::::::::::::::::::::::::::: :::::::::::: :: d1t57a_ 1 mekkicyfeepgkeNTERVLELVGERADQLGIRNFVVASVS----GETALRLSEMVE-GN 55 query 52 VYGVSMPSK---YSSDhSKGD-AAELARRTGLNFRTVSI--ePMFDAYMASLGLtglaEE 105 ::::::::: :::: :::: ::::::::::::::::: :::::::::::: :: d1t57a_ 56 IVSVTHHAGfreKGQL-ELEDeARDALLERGVNVYAGSHalsGVGRGISNRFGG---vTP 111 query 106 NL----------qsrlrgTTLMAISNQ-------eGHIVLAPGnkselavgystlygdsV 148 :: ::::::::: :::::::: : d1t57a_ 112 VEimaetlrmvsqgfkvcVEIAIMAADaglipvdeEVIAIGGT-----------awgadT 160 query 149 GAYgpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 208 ::: d1t57a_ 161 ALV--------------------------------------------------------- 163 query 209 adaivaagydrelvvktlrmvdtaeykrrqyPPGTkisakgfgkdrrlpitnrwregh 266 :::: d1t57a_ 164 ----------------ltpahmnsvfdlrihEVIA-------------------mprp 186 FAST alignment (Normalized score: 3.32 Raw score:738.10) query 1 DAD------------EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS--ALVAAIACDA 46 ::::::::::::::::::::::::::: :::::::::: d1t57a_ 1 ---MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVAS------VSGETALRLSEM 51 query 47 LGAQ--NVYGVSMPSKYSSDH-------------SKGDAAELARRTGLNFRTVSI----- 86 : :::::: ::::::::: ::::::::: d1t57a_ 52 V---EGNIVSVT---------HHAGFREKGQLELEDEARDALL-ERGVNVYAG--SHALS 96 query 87 EPMFDAYMASLGLTGLAEENLQ-----------------------SRLRGTTLMAI---- 119 ::::::::: :::::::::: d1t57a_ 97 GVGRGISNR-------------FGGVTPVEIMAETLRMVSQGFKVCVEIAIMAAD-AGLI 142 query 120 SNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQT 179 :::::::::: d1t57a_ 143 PVDEEVIAIG-------------------------------------------------- 152 query 180 PPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQY 239 d1t57a_ 153 ------------------------------------------------------------ 153 query 240 PPGTKISAKGFGKDRRLPITNRWREGH--------------------------------- 266 d1t57a_ 153 ---------------------------GTAWGADTALVLTPAHMNSVFDLRIHEVIAMPR 185 query 267 - 267 d1t57a_ 186 P 186 TMalign alignment (TM-score: 0.36 Raw score:96.37) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACD 45 :::::::::::::::::::::::::: :: ::::::: d1t57a_ 1 MEKKICYFEEPGKEN------TERVLELVGERADQLGIRNFVVASVS---GE-TALRLSE 50 query 46 ALGAQNVYGVSMPSKYSS--DHSKGD-AAELARRTGLNFRTVSIEPMFDAYMASL-GLTG 101 ::: :::::::::::::: :::::: :::::::::::::::::::::::::::: ::: d1t57a_ 51 MVE-GNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGG- 108 query 102 LAE--ENL--QSRL---------RG-TTLMA--I----SNQE-GHIVLAPGNKSELAVGY 140 :: : :: :: ::::: : :::: :::::::: d1t57a_ 109 -VTPV--EIM--AETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGT--------- 154 query 141 STLYGDSVGAY----------------GPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPE 184 ::: :::::: d1t57a_ 155 -AWG-ADTALVLTPAHMNSVFDLRIHE--------------------------------- 179 query 185 ASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK 244 :::: d1t57a_ 180 ------------------------------------------------------VIAM-- 183 query 245 ISAKGFGKDRRLPITNRWREGH 266 : : : d1t57a_ 184 -----P-R-----P-------- 186 HHsearch alignment (Probability: 0.08 E-value:0.04) query 16 AYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELAR 75 :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::: d1t57a_ 25 ERADQLGIRNFVVASVSG----ETALRLSEMV-EGNIVSVTHHAGFREKGQLELEDEARD 79 query 76 RT 77 :: d1t57a_ 80 AL 81
Intermediate <-- 2.174 --> HitDALI alignment (Z-score: 9.2 Raw score:680.80) d1t57a_ 1 mekkicyfeepgkENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVE-GNIVSV 59 :::::::::::::::::::::::::::::::::::::::: :::::: d1a3wa3 1 ---dmrnctpkptSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPnCPIILV 57 d1t57a_ 60 THhagfrekgqlelEDEARDALLERG-VNVYAGSHalsgvgrgisnrfggvtpveimAET 118 :: :::::::::::: :::::::: ::: d1a3wa3 58 TR------------CPRAARFSHLYRgVFPFVFEK--------------------epVSD 85 d1t57a_ 119 LRmvsqgfkvcVEIAIMAADAG---lIPVD-EEVIAIGGTA---WGADTALVLTPahmns 171 :: ::::::::::: :::: :::::::::: ::::::::::: d1a3wa3 86 WT------ddvEARINFGIEKAkefgILKKgDTYVSIQGFKagaGHSNTLQVSTV----- 134 d1t57a_ 172 vfdlriheviamprp 186 d1a3wa3 135 --------------- 135 FAST alignment (Normalized score: 9.67 Raw score:1527.00) d1t57a_ 1 MEKKICYFEEPGK----------ENTERVLELVGERADQLGIRNFVVASVSGETALRLSE 50 ::::::::::::::::::::::::::::::::::::: d1a3wa3 1 -------------DMRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSK 47 d1t57a_ 51 -MVEGNIVSVTHHAGFREKGQLE-LEDEARDALLE-RGVNVYAGSHALSGVGRGISNRFG 107 ::::::::: ::::::::::: :::::::: d1a3wa3 48 YRPNCPIILV-------------TRCPRAARFSHLYRGVFPFVF---------------- 78 d1t57a_ 108 GVTPVEIMAETLRMV---------SQGFKVCVEIAIMAADAGLIPVDEEVIAIGGTA--- 155 ::::::::::::::::::::::::::::::: d1a3wa3 79 ---------------EKEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQG--FKA 121 d1t57a_ 156 --WGADTALVLTPAHMNSVFDLRIHEVIAMPRP-- 186 ::::::::: d1a3wa3 122 GAGHSNTLQVS----------------------TV 134 TMalign alignment (TM-score: 0.51 Raw score:95.60) d1t57a_ 1 ----------MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSE 50 ::::::::::::::::::::::::::::::::::::: d1a3wa3 1 DMRNCTPKPT-------------STTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSK 47 d1t57a_ 51 M-VEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGV 109 : ::::::::::: ::::: ::::: ::::::::::::: d1a3wa3 48 YRPNCPIILVTRC--------PRAAR-FSHLY--RGVFPFVFEKEPV------------- 83 d1t57a_ 110 TPVEIMAETLRMVSQGFKVCVEIAIMAADA--GL-IP-VDEEVIAIGGT---AWGADTAL 162 : :: :: :: :::::::::: :: :: ::::::::::: :::::::: d1a3wa3 84 ---S--DW-TD------DV-EARINFGIEKAKEFGILKKGDTYVSIQGFKAGAGHSNTLQ 130 d1t57a_ 163 VLTPAHMNSVFDLRIHEVIAMPRP 186 :::: d1a3wa3 131 VSTV-------------------- 134 HHsearch alignment (Probability: 0.94 E-value:0.00) d1t57a_ 14 ENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMV-EGNIVSVTHHAGFREKGQLE 72 ::::::::::::::::::::::::::::::::::::::: :::::::::: d1a3wa3 11 STTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRC---------- 60 d1t57a_ 73 LEDEARDALLERGVNVYA-GSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVE 131 ::::::::::::::::: :::::: :::::::::::::: d1a3wa3 61 -PRAARFSHLYRGVFPFVFEKEPVS---------DWTDDVEARINFGI------------ 98 d1t57a_ 132 IAIMAADAGLIPVDEEVIAIGGTAWGADTALVL 164 ::::::::::::::::::::::::::::::: d1a3wa3 99 --EKAKEFGILKKGDTYVSIQGFKAGAGHSNTL 129