Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t57a_ | Hypothetical protein MTH1675 | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
| Hit | d1e0ta3 | Pyruvate kinase, C-terminal domain | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
Query <-- 0.668 --> IntermediateDALI alignment (Z-score: 4.8 Raw score:501.90) query 1 ---------dadeeVYSALVVGLRAYVAKNGFRSVLIGLSGgidsALVAAIACDALGaQN 51 ::::::::::::::::::::::::::: :::::::::::: :: d1t57a_ 1 mekkicyfeepgkeNTERVLELVGERADQLGIRNFVVASVS----GETALRLSEMVE-GN 55 query 52 VYGVSMPSK---YSSDhSKGD-AAELARRTGLNFRTVSI--ePMFDAYMASLGLtglaEE 105 ::::::::: :::: :::: ::::::::::::::::: :::::::::::: :: d1t57a_ 56 IVSVTHHAGfreKGQL-ELEDeARDALLERGVNVYAGSHalsGVGRGISNRFGG---vTP 111 query 106 NL----------qsrlrgTTLMAISNQ-------eGHIVLAPGnkselavgystlygdsV 148 :: ::::::::: :::::::: : d1t57a_ 112 VEimaetlrmvsqgfkvcVEIAIMAADaglipvdeEVIAIGGT-----------awgadT 160 query 149 GAYgpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 208 ::: d1t57a_ 161 ALV--------------------------------------------------------- 163 query 209 adaivaagydrelvvktlrmvdtaeykrrqyPPGTkisakgfgkdrrlpitnrwregh 266 :::: d1t57a_ 164 ----------------ltpahmnsvfdlrihEVIA-------------------mprp 186 FAST alignment (Normalized score: 3.32 Raw score:738.10) query 1 DAD------------EEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDS--ALVAAIACDA 46 ::::::::::::::::::::::::::: :::::::::: d1t57a_ 1 ---MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVAS------VSGETALRLSEM 51 query 47 LGAQ--NVYGVSMPSKYSSDH-------------SKGDAAELARRTGLNFRTVSI----- 86 : :::::: ::::::::: ::::::::: d1t57a_ 52 V---EGNIVSVT---------HHAGFREKGQLELEDEARDALL-ERGVNVYAG--SHALS 96 query 87 EPMFDAYMASLGLTGLAEENLQ-----------------------SRLRGTTLMAI---- 119 ::::::::: :::::::::: d1t57a_ 97 GVGRGISNR-------------FGGVTPVEIMAETLRMVSQGFKVCVEIAIMAAD-AGLI 142 query 120 SNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQT 179 :::::::::: d1t57a_ 143 PVDEEVIAIG-------------------------------------------------- 152 query 180 PPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQY 239 d1t57a_ 153 ------------------------------------------------------------ 153 query 240 PPGTKISAKGFGKDRRLPITNRWREGH--------------------------------- 266 d1t57a_ 153 ---------------------------GTAWGADTALVLTPAHMNSVFDLRIHEVIAMPR 185 query 267 - 267 d1t57a_ 186 P 186 TMalign alignment (TM-score: 0.36 Raw score:96.37) query 1 ---------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACD 45 :::::::::::::::::::::::::: :: ::::::: d1t57a_ 1 MEKKICYFEEPGKEN------TERVLELVGERADQLGIRNFVVASVS---GE-TALRLSE 50 query 46 ALGAQNVYGVSMPSKYSS--DHSKGD-AAELARRTGLNFRTVSIEPMFDAYMASL-GLTG 101 ::: :::::::::::::: :::::: :::::::::::::::::::::::::::: ::: d1t57a_ 51 MVE-GNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGG- 108 query 102 LAE--ENL--QSRL---------RG-TTLMA--I----SNQE-GHIVLAPGNKSELAVGY 140 :: : :: :: ::::: : :::: :::::::: d1t57a_ 109 -VTPV--EIM--AETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGT--------- 154 query 141 STLYGDSVGAY----------------GPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPE 184 ::: :::::: d1t57a_ 155 -AWG-ADTALVLTPAHMNSVFDLRIHE--------------------------------- 179 query 185 ASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK 244 :::: d1t57a_ 180 ------------------------------------------------------VIAM-- 183 query 245 ISAKGFGKDRRLPITNRWREGH 266 : : : d1t57a_ 184 -----P-R-----P-------- 186 HHsearch alignment (Probability: 0.08 E-value:0.04) query 16 AYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELAR 75 :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::: d1t57a_ 25 ERADQLGIRNFVVASVSG----ETALRLSEMV-EGNIVSVTHHAGFREKGQLELEDEARD 79 query 76 RT 77 :: d1t57a_ 80 AL 81
Intermediate <-- 2.203 --> HitDALI alignment (Z-score: 10.9 Raw score:720.10) d1t57a_ 1 mekkicyfeepgkeNTERVLELVGERADQLGIRNFVVASVSGETALRLSEM-VEGNIVSV 59 ::::::::::::::::::::::::::::::::::::: :::::::: d1e0ta3 1 --------------ITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYfPDATILAL 46 d1t57a_ 60 ThhagfrekgqlELEDeARDALLERG-VNVYAGSHalsgvgrgisnrfggvtpveimaet 118 : :::: ::::::::: :::::::: d1e0ta3 47 T-----------TNEK-TAHQLVLSKgVVPQLVKE------------------------- 69 d1t57a_ 119 lrmvsQGFKVCVEIAIMAADAGLIPVDEEVIAIGGT---AWGADTALVLTPahmnsvfdl 175 ::::::::::::::::::::::::::::::: :::::::::::: d1e0ta3 70 ---itSTDDFYRLGKELALQSGLAHKGDVVVMVSGAlvpSGTTNTASVHVL--------- 117 d1t57a_ 176 riheviamprp 186 d1e0ta3 118 ----------- 118 FAST alignment (Normalized score: 9.99 Raw score:1473.00) d1t57a_ 1 MEKKICYFEEPGKEN-TERVLELVGERADQLGIRNFVVASVSGETALRLSE-MVEGNIVS 58 ::::::::::::::::::::::::::::::::::: :::::::: d1e0ta3 1 ---------------ITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILA 45 d1t57a_ 59 VTHHAGFREKGQLE-LEDEARDALLE-RGVNVYAGSHALSGVGRGISNRFGGVTPVEIMA 116 : ::::::::::: :::::::::: d1e0ta3 46 L-------------TTNEKTAHQLVLSKGVVPQLVKE----------------------- 69 d1t57a_ 117 ETLRMVS--QGFKVCVEIAIMAADAGLIPVDEEVIAIGGTA------WGADTALVLTPAH 168 ::::::::::::::::::::::::::::: :::::::::: d1e0ta3 70 -------ITSTDDFYRLGKELALQSGLAHKGDVVVMVS---GALVPSGTTNTASVHV--- 116 d1t57a_ 169 MNSVFDLRIHEVIAMPRP- 186 d1e0ta3 117 ------------------L 117 TMalign alignment (TM-score: 0.51 Raw score:94.42) d1t57a_ 1 MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEM-VEGNIVSV 59 ::::::::::::::::::::::::::::::::::::: :::::::: d1e0ta3 1 --------------ITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILAL 46 d1t57a_ 60 THHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETL 119 :: : ::::: ::::: :::::::::: :: : d1e0ta3 47 TT-N-------EKTAH-QLVLS--KGVVPQLVKE-IT-------------------S--- 72 d1t57a_ 120 RMVSQGFKVCVEIAIMAADAGL-IPVD-EEVIAIGG--TAW-GADTALVLTPAHMNSVFD 174 ::::::::::::: :: :::: :::::::: ::: :::::::::: d1e0ta3 73 ------TDDFYRLGKELAL-QSGLAHKGDVVVMVSGALVPSGTTNTASVHVL-------- 117 d1t57a_ 175 LRIHEVIAMPRP 186 d1e0ta3 118 ------------ 118 HHsearch alignment (Probability: 0.95 E-value:0.00) d1t57a_ 16 TERVLELVGERADQLGIRNFVVASVSGETALRLSEMV-EGNIVSVTHHAGFREKGQLELE 74 ::::::::::::::::::::::::::::::::::::: :::::::::: d1e0ta3 2 TEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTN------------ 49 d1t57a_ 75 DEARDAL-LERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIA 133 ::::::: :::::::::::: ::::::::::::: d1e0ta3 50 EKTAHQLVLSKGVVPQLVKE--------------ITSTDDFYRLGKE------------- 82 d1t57a_ 134 IMAADAGLIPVDEEVIAIGGTAWGADTA 161 ::::::::::::::::::::::::::: d1e0ta3 83 -LALQSGLAHKGDVVVMVSGALVPSGTT 109