Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1k75a_ | L-histidinol dehydrogenase HisD | ALDH-like | ALDH-like | α/β |
| Hit | d1cqxa3 | Flavohemoglobin, C-terminal domain | Ferredoxin reductase-like, C-terminal NADP-linked domain | Ferredoxin reductase-like, C-terminal NADP-linked domain | α/β |
Query <-- 0.681 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:473.90) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 query 1 -----------------------------dadeEVYSA---------lvvglrayvakng 22 ::::: d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknieTFHTAqklppvdvetqpgvrcqqvtrp 120 query 23 FRSVLIGLS-----GGIDSALVAAIACDALGaQNVYGVSMPSkyssdhsKGDAAELARRT 77 ::::::::: ::::::::::::::::: :::::::::: ::::::::::: d1k75a_ 121 VASVGLYIPggsapLFSTVLMLATPASIAGC-KKVVLCSPPP------iADEILYAAQLC 173 query 78 GL-NFRTVsiepmfdaymaslgltglaeenlqsrlRGTTLMAISNQ----EGHI-VLAPg 131 :: ::::: ::::::::::: :::: :::: d1k75a_ 174 GVqDVFNV--------------------------gGAQAIAALAFGtesvPKVDkIFGP- 206 query 132 nkselavgysTLYGDSVG----------AYGPikdvyktsifrlaewrnraaaergqtpp 181 :::::::: :::: d1k75a_ 207 ---------gNAFVTEAKrqvsqrldgaAIDM-----------------pagpsevlvia 240 query 182 ipeasitkpdyPVLD-------aiLELYvdrdtgADAIVAaGYDREL--------vvKTL 226 :::: :::: :::::: :::::: ::: d1k75a_ 241 dsgatpdfvasDLLSqaehgpdsqVILLtpaadmARRVAE-AVERQLaelpraetarQAL 299 query 227 RMvdtaeykrrqyppgtkisAKGF------------------------------------ 250 :: :::: d1k75a_ 300 NAsrlivtkdlaqcveisnqYGPEhliiqtrnarelvdsitsagsvflgdwspesagdya 359 query 251 ----------GKDR---------------------------------------------- 254 :::: d1k75a_ 360 sgtnhvlptyGYTAtcsslgladfqkrmtvqelskegfsalastietlaaaerltahkna 419 query 255 rlpitnrwregh 266 d1k75a_ 420 vtlrvnalkeqa 431 FAST alignment (Normalized score: 1.61 Raw score:543.70) query 1 DADEEVYSALVVGLRAYVAKNG-------------------------------------- 22 d1k75a_ 1 ----------------------NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILD 38 query 23 ------------------------------------------------------------ 23 d1k75a_ 39 NVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTA 98 query 23 ----------------------FRSVLIGLSG--------GIDSALVAAIACDALGAQNV 52 ::::::: ::::::::::::: :::::: d1k75a_ 99 QKLPPVDVETQPGVRCQQVTRPVASVGLY---IPGGSAPLFSTVLMLATPASI-AGCKKV 154 query 53 YGVSMPSKYSSDHSKGDAAELARRTGLN---FRTVSIEPMFDAYMASLGLTGLAEENLQ- 108 :: :::::::::::::::: :::: d1k75a_ 155 VL--CSPPPIADEILYAAQL--------CGVQDVF------------------------N 180 query 109 ---------------------------SRLRGTTLMAISNQE---GHIVLAPGNKSELAV 138 ::::::::::::: :::: d1k75a_ 181 VGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQ--RLDGAAI----------- 227 query 139 GYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAI 198 d1k75a_ 228 ------------------------------------------------------------ 228 query 199 LELYVDRDTGADAI------------VAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKIS 246 ::::::::::::::::::: d1k75a_ 228 --------------DMPAGPSEVLVIADSGATPDFVASDLLSQAE--------------- 258 query 247 AKGFGKDRRLPITNRWREGH---------------------------------------- 266 d1k75a_ 259 --------------------HGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQA 298 query 267 ------------------------------------------------------------ 267 d1k75a_ 299 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 358 query 267 ------------------------------------------------------------ 267 d1k75a_ 359 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 418 query 267 ------------- 267 d1k75a_ 419 AVTLRVNALKEQA 431 TMalign alignment (TM-score: 0.41 Raw score:108.12) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 query 1 -----------------------------DADEEVYSALVVGL---------------RA 16 :::::::::::: d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAV--KNIETFHTAQKLPPVDVETQPGVRCQQ-- 116 query 17 YVAKNGFRSVLIGLS----GGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAE 72 ::::::::::::: ::::::::::::::::::::::::::: : ::::::: d1k75a_ 117 --VTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP-----P-IADEILY 168 query 73 LARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAIS--NQEGHIVLAP 130 :::::::::::::: :::::::::::: :::::::::: d1k75a_ 169 AAQLCGVQDVFNVG----------------------GAQAIAALAFGTESVPKVDKIFGP 206 query 131 GNKSELAVGYSTLYGDS-V----------GAYGPIK-DVYK-------------TSIFRL 165 : :::::: : ::::::: ::: d1k75a_ 207 G----------NAFVTEAKRQVSQRLDGAAIDMPAGP-SEVLVIADSGATPDFV------ 249 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAI-----LELYVDRDTGADAIVAAGYD-R 219 :::::::: :::: :::::::::::::: : d1k75a_ 250 -------------------------ASDLLSQAEHGPDSQVI--LLTPAADMARRVAEAV 282 query 220 E------------L-VVKTLR----------------MVDTAE--YKR------------ 236 : : :::::: : : d1k75a_ 283 ERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQ-----YGP--EHLIIQTRNAREL 335 query 237 ------RQYPPGTKISA--------------------KG-F-GKD--------------- 253 ::::: :: : ::: d1k75a_ 336 VDSITS------AGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV 389 query 254 ------------------------------------------RRLPITNRWREGH 266 d1k75a_ 390 QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA------------- 431 HHsearch alignment (Probability: 0.01 E-value:0.21) query 65 HSKGDAAELARRTGLNFRTVSIEPMFDAYMAS 96 :::::::::::::::::::::::::::::::: d1k75a_ 308 KDLAQCVEISNQYGPEHLIIQTRNARELVDSI 339
Intermediate <-- 0.658 --> HitDALI alignment (Z-score: 5.7 Raw score:456.60) d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 d1cqxa3 1 ------------------------------------------------------------ 1 d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknietfhtaqklppvdvetqpgvrcqqvtrp 120 d1cqxa3 1 ------------------------------------------------------------ 1 d1k75a_ 121 vasvglyipggsaplfstvlmlatpasiagckkvvlcspppiadeilyaaqlcgvqdvfn 180 d1cqxa3 1 ------------------------------------------------------------ 1 d1k75a_ 181 vggaqaiaalafgtesvpkvdkifgpgnafvteakrqvsqrldgaaidmpAGPSEVLVIA 240 :::::::::: d1cqxa3 1 ------------------------------------------------dvDAKTPIVLIS 12 d1k75a_ 241 DSgATPDFVASDLLSQAEhGPDSQVILLTPA-----ADMARRVAEAVErqlaelpraeta 295 :: ::::::::::::::: :::::::::::: :::::::::::: d1cqxa3 13 GG-VGLTPMVSMLKVALQ-APPRQVVFVHGArnsavHAMRDRLREAAK------------ 58 d1k75a_ 296 rqaLNASRLIVT-----------------KDLAqcVEISNQYG---pEHLIIQTR--NAR 333 ::::::::: :::: :::::::: :::::::: ::: d1cqxa3 59 --tYENLDLFVFydqplpedvqgrdydypGLVD--VKQIEKSIllpdADYYICGPipFMR 114 d1k75a_ 334 ELVDSI--TSAG--SVFLGDWspesagdyasgtnhvlptygytatcsslgladfqkrmtv 389 :::::: :::: ::::::: d1cqxa3 115 MQHDALknLGIHeaRIHYEVF--------------------------------------- 135 d1k75a_ 390 qelskegfsalastietlaaaerltahknavtlrvnalkeqa 431 d1cqxa3 136 -----------------------------------gpdlfae 142 FAST alignment (Normalized score: 1.78 Raw score:441.30) d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 d1cqxa3 1 ------------------------------------------------------------ 1 d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRP 120 d1cqxa3 1 ------------------------------------------------------------ 1 d1k75a_ 121 V--------------------------------ASVGLYIPGGSA---PLFSTVLMLATP 145 ::::::::: :::::::::::: d1cqxa3 1 -DVDAKTPIVLISGGVGLTPMVSMLKVALQAPPRQVVFVHGA---RNSAVHAMRDRLREA 56 d1k75a_ 146 ASIAGC--KKVVLCSPPPIADEILYAAQLCGVQD-------VFNVGGAQ--AIAALAFGT 194 :::: ::::::: :::::: :::: ::::: d1cqxa3 57 AKTY--ENLDLFVFY-DQPLPE------------DVQGRDYDYPG----LVDVKQI---- 93 d1k75a_ 195 ESVPKVDKIF------------GPGNAFVTEAKRQVSQRLDGAAID--------MPAGPS 234 :::::::::::::::: :::::: d1cqxa3 94 ----------EKSILLPDADYYICGPIPFMRMQHDALK--------NLGIHEARIHYEVF 135 d1k75a_ 235 EVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAET 294 d1cqxa3 136 ------------------------------------------------------------ 136 d1k75a_ 295 ARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPES 354 d1cqxa3 136 ------------------------------------------------------------ 136 d1k75a_ 355 AGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLT 414 d1cqxa3 136 ------------------------------------------------------------ 136 d1k75a_ 415 AHKNAVTLRVNALKEQA------- 431 d1cqxa3 136 -----------------GPDLFAE 142 TMalign alignment (TM-score: 0.21 Raw score:90.29) d1k75a_ 1 -NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTT 59 d1cqxa3 1 D----------------------------------------------------------- 1 d1k75a_ 60 VTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTR 119 d1cqxa3 2 ------------------------------------------------------------ 2 d1k75a_ 120 PVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEILYAAQLCGVQDVF 179 :: d1cqxa3 2 -----------------VD----------------------------------------- 3 d1k75a_ 180 NVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVI 239 : ::::::: d1cqxa3 4 --------------------------A--------------------------KTPIVLI 11 d1k75a_ 240 ADSGATPDFVASDLLSQAEHGPDSQVILLTPA--A--D-MARRVAEAVERQLAELPRAET 294 ::: :::::::::::::::::: ::::::::: : : ::::::: :: d1cqxa3 12 SGG-VGLTPMVSMLKVALQAPP-RQVVFVHGARNSAVHAMRDRLRE-AA----------- 57 d1k75a_ 295 ARQALNASRLIVT----------------KDLAQCVEISNQ-YGP--EHLIIQTR-N-AR 333 :: ::::::::: ::::: :::::: ::: :::::::: : :: d1cqxa3 58 -KT-YENLDLFVFYDQPLPEDVQGRDYDYPGLVD-VKQIEKSILLPDADYYICGPIPFMR 114 d1k75a_ 334 ELVDSI--TSAG--SVFLGDWS------PESAGDYASGTNHVLPTYGYTATCSSLGLADF 383 :::::: :::: :::::::: d1cqxa3 115 MQHDALKNLGIHEARIHYEVFGPDLFAE-------------------------------- 142 d1k75a_ 384 QKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA 431 d1cqxa3 143 ------------------------------------------------ 143 HHsearch alignment (Probability: 0.07 E-value:0.01) d1k75a_ 265 VILLTPAADMARRVAEAVER 284 :::::::::::::::::::: d1cqxa3 103 DYYICGPIPFMRMQHDALKN 122