Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1k75a_ | L-histidinol dehydrogenase HisD | ALDH-like | ALDH-like | α/β |
| Hit | d1i9ga_ | Probable methyltransferase Rv2118c | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 0.681 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:473.90) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 query 1 -----------------------------dadeEVYSA---------lvvglrayvakng 22 ::::: d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknieTFHTAqklppvdvetqpgvrcqqvtrp 120 query 23 FRSVLIGLS-----GGIDSALVAAIACDALGaQNVYGVSMPSkyssdhsKGDAAELARRT 77 ::::::::: ::::::::::::::::: :::::::::: ::::::::::: d1k75a_ 121 VASVGLYIPggsapLFSTVLMLATPASIAGC-KKVVLCSPPP------iADEILYAAQLC 173 query 78 GL-NFRTVsiepmfdaymaslgltglaeenlqsrlRGTTLMAISNQ----EGHI-VLAPg 131 :: ::::: ::::::::::: :::: :::: d1k75a_ 174 GVqDVFNV--------------------------gGAQAIAALAFGtesvPKVDkIFGP- 206 query 132 nkselavgysTLYGDSVG----------AYGPikdvyktsifrlaewrnraaaergqtpp 181 :::::::: :::: d1k75a_ 207 ---------gNAFVTEAKrqvsqrldgaAIDM-----------------pagpsevlvia 240 query 182 ipeasitkpdyPVLD-------aiLELYvdrdtgADAIVAaGYDREL--------vvKTL 226 :::: :::: :::::: :::::: ::: d1k75a_ 241 dsgatpdfvasDLLSqaehgpdsqVILLtpaadmARRVAE-AVERQLaelpraetarQAL 299 query 227 RMvdtaeykrrqyppgtkisAKGF------------------------------------ 250 :: :::: d1k75a_ 300 NAsrlivtkdlaqcveisnqYGPEhliiqtrnarelvdsitsagsvflgdwspesagdya 359 query 251 ----------GKDR---------------------------------------------- 254 :::: d1k75a_ 360 sgtnhvlptyGYTAtcsslgladfqkrmtvqelskegfsalastietlaaaerltahkna 419 query 255 rlpitnrwregh 266 d1k75a_ 420 vtlrvnalkeqa 431 FAST alignment (Normalized score: 1.61 Raw score:543.70) query 1 DADEEVYSALVVGLRAYVAKNG-------------------------------------- 22 d1k75a_ 1 ----------------------NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILD 38 query 23 ------------------------------------------------------------ 23 d1k75a_ 39 NVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTA 98 query 23 ----------------------FRSVLIGLSG--------GIDSALVAAIACDALGAQNV 52 ::::::: ::::::::::::: :::::: d1k75a_ 99 QKLPPVDVETQPGVRCQQVTRPVASVGLY---IPGGSAPLFSTVLMLATPASI-AGCKKV 154 query 53 YGVSMPSKYSSDHSKGDAAELARRTGLN---FRTVSIEPMFDAYMASLGLTGLAEENLQ- 108 :: :::::::::::::::: :::: d1k75a_ 155 VL--CSPPPIADEILYAAQL--------CGVQDVF------------------------N 180 query 109 ---------------------------SRLRGTTLMAISNQE---GHIVLAPGNKSELAV 138 ::::::::::::: :::: d1k75a_ 181 VGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQ--RLDGAAI----------- 227 query 139 GYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAI 198 d1k75a_ 228 ------------------------------------------------------------ 228 query 199 LELYVDRDTGADAI------------VAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKIS 246 ::::::::::::::::::: d1k75a_ 228 --------------DMPAGPSEVLVIADSGATPDFVASDLLSQAE--------------- 258 query 247 AKGFGKDRRLPITNRWREGH---------------------------------------- 266 d1k75a_ 259 --------------------HGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQA 298 query 267 ------------------------------------------------------------ 267 d1k75a_ 299 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 358 query 267 ------------------------------------------------------------ 267 d1k75a_ 359 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 418 query 267 ------------- 267 d1k75a_ 419 AVTLRVNALKEQA 431 TMalign alignment (TM-score: 0.41 Raw score:108.12) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 query 1 -----------------------------DADEEVYSALVVGL---------------RA 16 :::::::::::: d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAV--KNIETFHTAQKLPPVDVETQPGVRCQQ-- 116 query 17 YVAKNGFRSVLIGLS----GGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAE 72 ::::::::::::: ::::::::::::::::::::::::::: : ::::::: d1k75a_ 117 --VTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP-----P-IADEILY 168 query 73 LARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAIS--NQEGHIVLAP 130 :::::::::::::: :::::::::::: :::::::::: d1k75a_ 169 AAQLCGVQDVFNVG----------------------GAQAIAALAFGTESVPKVDKIFGP 206 query 131 GNKSELAVGYSTLYGDS-V----------GAYGPIK-DVYK-------------TSIFRL 165 : :::::: : ::::::: ::: d1k75a_ 207 G----------NAFVTEAKRQVSQRLDGAAIDMPAGP-SEVLVIADSGATPDFV------ 249 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAI-----LELYVDRDTGADAIVAAGYD-R 219 :::::::: :::: :::::::::::::: : d1k75a_ 250 -------------------------ASDLLSQAEHGPDSQVI--LLTPAADMARRVAEAV 282 query 220 E------------L-VVKTLR----------------MVDTAE--YKR------------ 236 : : :::::: : : d1k75a_ 283 ERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQ-----YGP--EHLIIQTRNAREL 335 query 237 ------RQYPPGTKISA--------------------KG-F-GKD--------------- 253 ::::: :: : ::: d1k75a_ 336 VDSITS------AGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV 389 query 254 ------------------------------------------RRLPITNRWREGH 266 d1k75a_ 390 QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA------------- 431 HHsearch alignment (Probability: 0.01 E-value:0.21) query 65 HSKGDAAELARRTGLNFRTVSIEPMFDAYMAS 96 :::::::::::::::::::::::::::::::: d1k75a_ 308 KDLAQCVEISNQYGPEHLIIQTRNARELVDSI 339
Intermediate <-- 1.062 --> HitDALI alignment (Z-score: 6.1 Raw score:537.20) d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 d1i9ga_ 1 ------------------------------------------------------------ 1 d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknietfhtaqklppvdvetqpgvrcqqvtrp 120 d1i9ga_ 1 ------------------------------------------------------------ 1 d1k75a_ 121 vasvglyipggsaplfstvlmlatpasiagckkvvlcspppiadeilyaaqlcgvqdvfn 180 d1i9ga_ 1 ----------------tgpfsigervqltdakgrrytmsltpgaefhthrgsiahdavig 44 d1k75a_ 181 vggaqaiaalafgtesvpkvdkifgpgnafvteakrqvsqrldgaaidmpaGPSEVLVIA 240 ::::::::: d1i9ga_ 45 leqgsvvkssngalflvlrpllvdyvmsmprgpqviypkdaaqivhegdifPGARVLEAG 104 d1k75a_ 241 dsgatpdfvASDLLSQAEH-GPDSQVILLTPAADMARRVAEAVERQLAelpraetarqaL 299 :::::::::: :::::::::::::::::::::::::::: : d1i9ga_ 105 ------agsGALTLSLLRAvGPAGQVISYEQRADHAEHARRNVSGCYG---------qpP 149 d1k75a_ 300 NASRLIVTkdlaQCVEI-snQYGPEHLIIQTRNARELVDS-ITSA---GSVFLGDW---- 350 :::::::: ::::: :::::::::::::::::::: :::: :::::::: d1i9ga_ 150 DNWRLVVS----DLADSelpDGSVDRAVLDMLAPWEVLDAvSRLLvagGVLMVYVAtvtq 205 d1k75a_ 351 -------spesagdyASGT----------------------nhvlptygytATCSslgla 381 :::: :::: d1i9ga_ 206 lsrivealrakqcwtEPRAwetlqrgwnvvglavrpqhsmrghtaflvatrRLAP----- 260 d1k75a_ 382 dfqkrmtvqelskegfsalastietlaaaerltahknavtlrvnalkeqa 431 d1i9ga_ 261 ----------------------------------------------gava 264 FAST alignment (Normalized score: 2.51 Raw score:845.30) d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 d1i9ga_ 1 ------------------------------------------------------------ 1 d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRP 120 d1i9ga_ 1 ------------------------------------------------------------ 1 d1k75a_ 121 VASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEILYAAQLCGVQDVFN 180 d1i9ga_ 1 ------------------------------------------------------------ 1 d1k75a_ 181 VGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAG-------- 232 d1i9ga_ 1 ----------------------------------------------------TGPFSIGE 8 d1k75a_ 233 ------------------------------------------------------------ 233 d1i9ga_ 9 RVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVD 68 d1k75a_ 233 ----------------------------PSEVLVIADSG---ATPDFVASDLLSQAEHGP 261 :::::: :::::::::::: ::: d1i9ga_ 69 YVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLE-----AGAGSGALTLSLLRA---VGP 120 d1k75a_ 262 DSQVILLTPAADMARRVAEAVERQLAELPRAETARQA----LNASRLIVTKDLAQCVEIS 317 :::::::::::::::::::::::: :::::::: d1i9ga_ 121 AGQVISYEQRADHAEHARRNVSGC-------------YGQPPDNWRLVV----------- 156 d1k75a_ 318 NQY-----------GPEHLIIQTRNARELVDSITSA-------GSVFLGDWSPESAGDYA 359 ::::::::::::::::::: :::: d1i9ga_ 157 ---SDLADSELPDGSVDRAVLDMLAPWEVLDAV---SRLLVAGGVLM------------- 197 d1k75a_ 360 SGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNA 419 d1i9ga_ 198 ------------------------------------------------------------ 198 d1k75a_ 420 VTLRVNALKEQA------------------------------------------------ 431 d1i9ga_ 198 ------------VYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVGLAVRPQHSM 245 d1k75a_ 432 ------------------- 432 d1i9ga_ 246 RGHTAFLVATRRLAPGAVA 264 TMalign alignment (TM-score: 0.26 Raw score:113.73) d1k75a_ 1 -------------------NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK 41 d1i9ga_ 1 TGPFSIGERVQLTDAKGRR----------------------------------------- 19 d1k75a_ 42 ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQ------------------ 83 ::::: d1i9ga_ 20 -------------------------------------YTMSLTPGAEFHTHRGSIAHDAV 42 d1k75a_ 84 --------------------AMAVAVKNIE------------TF--H--TAQK---LPPV 104 :::::::: : : :: d1i9ga_ 43 IGLEQGSVVKSSNGALFLVL--RPLLVDYVMSMPRGPQVIYP-KDAAQI--VHEGD---- 93 d1k75a_ 105 DVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIA- 163 :::::::::::: :::::::::::::: :::::::::::::: d1i9ga_ 94 -------------IFPGARVLEAGA----GSGALTLSLLRAVG--PAGQVISYEQRADHA 134 d1k75a_ 164 DEILYAAQ-LC---G-VQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQV 218 :::::::: :: : ::::::::::: :::::: ::::::::::: ::::: :: d1i9ga_ 135 EHARRNVSGCYGQPPDNWRLVVSDLAD--SELPDG-----SVDRAVLDMLA-PWEVL-DA 185 d1k75a_ 219 SQRLDGA--AIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQ------------ 264 ::: ::: :::::::::: :::: d1i9ga_ 186 VSR-LLVAGGVLMVYVATV-------------------------TQLSRIVEALRAKQCW 219 d1k75a_ 265 ----VILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQY 320 d1i9ga_ 220 TEPR-------------------------------------------------------- 223 d1k75a_ 321 GPEHLIIQTRN-----ARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATC 375 ::::::::::: :::::::: :: ::: : : d1i9ga_ 224 AWETLQRGWNVVGLAV---------------RPQHSMRG-HT--------AFL--V---A 254 d1k75a_ 376 SSLGLAD--------FQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNAL 427 : : d1i9ga_ 255 T-----RRLAPGAVA--------------------------------------------- 264 d1k75a_ 428 KEQA 431 d1i9ga_ 265 ---- 265 HHsearch alignment (Probability: 0.03 E-value:0.19) d1k75a_ 295 ARQALNASRLIV--TKDLAQCVEISNQYGPE 323 :::::::::::: ::::::::::::::::: d1i9ga_ 186 VSRLLVAGGVLMVYVATVTQLSRIVEALRAK 216