Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1k75a_ | L-histidinol dehydrogenase HisD | ALDH-like | ALDH-like | α/β |
| Hit | d1o20a_ | Gamma-glutamyl phosphate reductase | ALDH-like | ALDH-like | α/β |
Query <-- 0.681 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:473.90) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 query 1 -----------------------------dadeEVYSA---------lvvglrayvakng 22 ::::: d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknieTFHTAqklppvdvetqpgvrcqqvtrp 120 query 23 FRSVLIGLS-----GGIDSALVAAIACDALGaQNVYGVSMPSkyssdhsKGDAAELARRT 77 ::::::::: ::::::::::::::::: :::::::::: ::::::::::: d1k75a_ 121 VASVGLYIPggsapLFSTVLMLATPASIAGC-KKVVLCSPPP------iADEILYAAQLC 173 query 78 GL-NFRTVsiepmfdaymaslgltglaeenlqsrlRGTTLMAISNQ----EGHI-VLAPg 131 :: ::::: ::::::::::: :::: :::: d1k75a_ 174 GVqDVFNV--------------------------gGAQAIAALAFGtesvPKVDkIFGP- 206 query 132 nkselavgysTLYGDSVG----------AYGPikdvyktsifrlaewrnraaaergqtpp 181 :::::::: :::: d1k75a_ 207 ---------gNAFVTEAKrqvsqrldgaAIDM-----------------pagpsevlvia 240 query 182 ipeasitkpdyPVLD-------aiLELYvdrdtgADAIVAaGYDREL--------vvKTL 226 :::: :::: :::::: :::::: ::: d1k75a_ 241 dsgatpdfvasDLLSqaehgpdsqVILLtpaadmARRVAE-AVERQLaelpraetarQAL 299 query 227 RMvdtaeykrrqyppgtkisAKGF------------------------------------ 250 :: :::: d1k75a_ 300 NAsrlivtkdlaqcveisnqYGPEhliiqtrnarelvdsitsagsvflgdwspesagdya 359 query 251 ----------GKDR---------------------------------------------- 254 :::: d1k75a_ 360 sgtnhvlptyGYTAtcsslgladfqkrmtvqelskegfsalastietlaaaerltahkna 419 query 255 rlpitnrwregh 266 d1k75a_ 420 vtlrvnalkeqa 431 FAST alignment (Normalized score: 1.61 Raw score:543.70) query 1 DADEEVYSALVVGLRAYVAKNG-------------------------------------- 22 d1k75a_ 1 ----------------------NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILD 38 query 23 ------------------------------------------------------------ 23 d1k75a_ 39 NVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTA 98 query 23 ----------------------FRSVLIGLSG--------GIDSALVAAIACDALGAQNV 52 ::::::: ::::::::::::: :::::: d1k75a_ 99 QKLPPVDVETQPGVRCQQVTRPVASVGLY---IPGGSAPLFSTVLMLATPASI-AGCKKV 154 query 53 YGVSMPSKYSSDHSKGDAAELARRTGLN---FRTVSIEPMFDAYMASLGLTGLAEENLQ- 108 :: :::::::::::::::: :::: d1k75a_ 155 VL--CSPPPIADEILYAAQL--------CGVQDVF------------------------N 180 query 109 ---------------------------SRLRGTTLMAISNQE---GHIVLAPGNKSELAV 138 ::::::::::::: :::: d1k75a_ 181 VGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQ--RLDGAAI----------- 227 query 139 GYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAI 198 d1k75a_ 228 ------------------------------------------------------------ 228 query 199 LELYVDRDTGADAI------------VAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKIS 246 ::::::::::::::::::: d1k75a_ 228 --------------DMPAGPSEVLVIADSGATPDFVASDLLSQAE--------------- 258 query 247 AKGFGKDRRLPITNRWREGH---------------------------------------- 266 d1k75a_ 259 --------------------HGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQA 298 query 267 ------------------------------------------------------------ 267 d1k75a_ 299 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 358 query 267 ------------------------------------------------------------ 267 d1k75a_ 359 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 418 query 267 ------------- 267 d1k75a_ 419 AVTLRVNALKEQA 431 TMalign alignment (TM-score: 0.41 Raw score:108.12) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 query 1 -----------------------------DADEEVYSALVVGL---------------RA 16 :::::::::::: d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAV--KNIETFHTAQKLPPVDVETQPGVRCQQ-- 116 query 17 YVAKNGFRSVLIGLS----GGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAE 72 ::::::::::::: ::::::::::::::::::::::::::: : ::::::: d1k75a_ 117 --VTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP-----P-IADEILY 168 query 73 LARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAIS--NQEGHIVLAP 130 :::::::::::::: :::::::::::: :::::::::: d1k75a_ 169 AAQLCGVQDVFNVG----------------------GAQAIAALAFGTESVPKVDKIFGP 206 query 131 GNKSELAVGYSTLYGDS-V----------GAYGPIK-DVYK-------------TSIFRL 165 : :::::: : ::::::: ::: d1k75a_ 207 G----------NAFVTEAKRQVSQRLDGAAIDMPAGP-SEVLVIADSGATPDFV------ 249 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAI-----LELYVDRDTGADAIVAAGYD-R 219 :::::::: :::: :::::::::::::: : d1k75a_ 250 -------------------------ASDLLSQAEHGPDSQVI--LLTPAADMARRVAEAV 282 query 220 E------------L-VVKTLR----------------MVDTAE--YKR------------ 236 : : :::::: : : d1k75a_ 283 ERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQ-----YGP--EHLIIQTRNAREL 335 query 237 ------RQYPPGTKISA--------------------KG-F-GKD--------------- 253 ::::: :: : ::: d1k75a_ 336 VDSITS------AGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV 389 query 254 ------------------------------------------RRLPITNRWREGH 266 d1k75a_ 390 QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA------------- 431 HHsearch alignment (Probability: 0.01 E-value:0.21) query 65 HSKGDAAELARRTGLNFRTVSIEPMFDAYMAS 96 :::::::::::::::::::::::::::::::: d1k75a_ 308 KDLAQCVEISNQYGPEHLIIQTRNARELVDSI 339
Intermediate <-- 1.186 --> HitDALI alignment (Z-score: 15.4 Raw score:1866.90) d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 d1o20a_ 1 ---------------------------dellekakkvreawdvlrnattreknkaikkia 33 d1k75a_ 61 talkvsaEEIAAASER-------------------lsDELKQAMAVAVKNIETfhTAQK- 100 ::::::::: :::::::::::::::: :::: d1o20a_ 34 eklderrKEILEANRIdvekarergvkeslvdrlalnDKRIDEMIKACETVIG--LKDPv 91 d1k75a_ 101 -LPPVDVETQPGVRCQQVTRPVASVGLYIPGgsapLFSTVLMLATPASIAGCkKVVLCSP 159 :::::::::::::::::::::::::::::: ::::::::::::::::: ::::::: d1o20a_ 92 gEVIDSWVREDGLRIARVRVPIGPIGIIYES----RPNVTVETTILALKSGN-TILLRGG 146 d1k75a_ 160 PPIADEILYAAQLCG-----------vQDVF-NVGGaQAIAALAFGtesvpKVDKIFGPG 207 ::::::::::::::: :::: :::: ::::::::: ::::::::: d1o20a_ 147 SDALNSNKAIVSAIRealketeipessVEFIeNTDR-SLVLEMIRL---reYLSLVIPRG 202 d1k75a_ 208 NAFVTEAKRQVSqrldGAAIDMpAGPSEVLVIADSGA----TPDFVASDLLSQAEHGpdS 263 :::::::::::: :::::: :::::::::::::: :::::::::::::::: : d1o20a_ 203 GYGLISFVRDNA----TVPVLE-TGVGNCHIFVDESAdlkkAVPVIINAKTQRPGTC-nA 256 d1k75a_ 264 QVILLTP---AADMARRVAEAVERQL-----------------aelpraetarQALNASR 303 ::::::: :::::::::::::::: ::::::: d1o20a_ 257 AEKLLVHekiAKEFLPVIVEELRKHGvevrgcektreivpdvvpateddwpteYLDLIIA 316 d1k75a_ 304 LIVTKDLAQCVEISNQYGP-EHLIIQTR---NARELVDSItSAGSVFLGdwSPESAGD-- 357 ::::::::::::::::::: :::::::: ::::::::: :::::::: ::::::: d1o20a_ 317 IKVVKNVDEAIEHIKKYSTgHSESILTEnysNAKKFVSEI-DAAAVYVN--ASTRFTDgg 373 d1k75a_ 358 -yasGTNHVLPtygYTAT--CSSLGLADFQKRMTVQELSKegFSALastietlaaaerlt 414 ::::::: :::: :::::::::::::::::::: :::: d1o20a_ 374 qfgfGAEIGIS---TQRFhaRGPVGLRELTTYKFVVLGEY--HVRE-------------- 414 d1k75a_ 415 ahknavtlrvnalkeqa 431 d1o20a_ 415 ----------------- 415 FAST alignment (Normalized score: 7.78 Raw score:3287.00) d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 d1o20a_ 1 ------------------------------------------------------------ 1 d1k75a_ 61 TALKVSAEEIAAASERLSDEL--------------------------------------- 81 d1o20a_ 1 ---------------------DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDER 39 d1k75a_ 82 ------------------------------KQAMAVAVKNIETFHTAQKLP--------P 103 ::::::::::::::::: : d1o20a_ 40 RKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKACETVIG----LKDPVGEVI 95 d1k75a_ 104 VDVETQPGVRCQQVTRPVASVGLYIPGGSA-PLFSTVLMLATPASIAGCKKVVLCSPPPI 162 ::::::::::::::::::::::::: ::::::::::::::::: ::::::::: d1o20a_ 96 DSWVREDGLRIARVRVPIGPIGIIY-----ESRPNVTVETTILALKSG-NTILLRGGS-- 147 d1k75a_ 163 --ADEILYAAQLCGV--------------QDVFNVGGAQAIAALAFGTESVP----KVDK 202 :::::::::: :::::::::::::::: :::: d1o20a_ 148 DALNSNKAIVSA---IREALKETEIPESSVEFIENTDRSLVLEMI-------RLREYLSL 197 d1k75a_ 203 IFGPGNAFVTEAKRQVSQRLD--GAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHG 260 ::::::::::::::: :::: ::::::::::::::::::::::::::::: d1o20a_ 198 VIPRGGYGLISFVRD------NATVPV-LETGVGNCHIFVDESADLKKAVPVIINAK--- 247 d1k75a_ 261 PDSQ----------VILLTP----AADMARRVAEAVERQLAELPRAETARQAL------- 299 ::::: :::::::::::::: d1o20a_ 248 ----TQRPGTCNAAEKLLV-HEKIAKEFLPVIVEELRK---------------HGVEVRG 287 d1k75a_ 300 -------------------------NASRLIVTKDLAQCVEISNQYG---PEHLIIQTR- 330 :::::::::::::::::::: :::::::: d1o20a_ 288 CEKTREIVPDVVPATEDDWPTEYLDLIIAIKVVKNVDEAIEHIKK--YSTGHSESILT-E 344 d1k75a_ 331 ---NARELVDSITSAGSVFLGD-WSPESAGDYASGTNH-------------VLPTYGYTA 373 ::::::::: :::::: ::::: ::::: d1o20a_ 345 NYSNAKKFVSEI-DAAAVY---VNASTR----------FTDGGQFGFGAEIGISTQ---- 386 d1k75a_ 374 T----CSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKE 429 ::::::::::::::::::: d1o20a_ 387 -RFHARGPVGLRELTTYKFVVLGE------------------------------------ 409 d1k75a_ 430 QA----- 431 d1o20a_ 410 --YHVRE 414 TMalign alignment (TM-score: 0.53 Raw score:230.49) d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARG---------------- 44 :::::: d1o20a_ 1 --------------------------------------DELLEKAKKVREAWDVLRNATT 22 d1k75a_ 45 ------------DEALREYSAKFDKTTVTALKVSA-EEIAAASE-R-------------- 76 :: :::::::: : d1o20a_ 23 REKNKAIKKIAE---------------------KLDERRKEILEANRIDVEKARERGVKE 61 d1k75a_ 77 -------LSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 129 ::::::::::::::::::::::::::::::::::::::::::::::::::::: d1o20a_ 62 SLVDRLALNDKRIDEMIKACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYE 121 d1k75a_ 130 GGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEILYAA-QL--CG--------VQDV 178 : ::::::: :::::::::: :::::::::::::::::: :: :: :::: d1o20a_ 122 S---RPNVTVE-TTILALKSGN-TILLRGGSDALNSNKAIVSAIREALKETEIPESSVEF 176 d1k75a_ 179 FNVGGAQAIAALAFG-TESVPKVDKIFGPGN-AFVTEAKRQVSQRLDGAAIDMPAGPSEV 236 ::::::::::::::: ::::::::::: ::::::::::: ::::: :::::: d1o20a_ 177 IENTDRSLVLEMIRLR----EYLSLVIPRGGYGLISFVRDNAT-----VPVLE-TGVGNC 226 d1k75a_ 237 LVIA---D-SGATPDFVASDLLSQAEHG-PDSQVILLTP--AA-DMARRVAEAVERQLAE 288 :::: : ::::::::::::::::::: :::::::: :: :::::::::::::::: d1o20a_ 227 HIFVDESADLKKAVPVIINAKTQRPGTCN--AAEKLLVHEKIAKEFLPVIVEELRKHGVE 284 d1k75a_ 289 -----------------------LPRAETARQALNASRLIVTKDLAQCVEISNQ-YGPEH 324 ::::::::::::::::::::::::: ::::: d1o20a_ 285 VRGCEKTREIVPDVVPATEDDWP------TEYLDLIIAIKVVKNVDEAIEHIKKYSTGHS 338 d1k75a_ 325 LIIQTRNA-RELVDSIT--SAGSVFLGDWSPESAGDYAS-GT--NHVLPTYGYTATCSS- 377 :::::::: ::::::: ::::::::: ::: :::::: :: :::::: ::::::: d1o20a_ 339 ESILTENYS-NAKKFVSEIDAAAVYVNA-STR-FTDGGQFGFGAEIGIST--QRFHARGP 393 d1k75a_ 378 LGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA 431 ::::::::::::::::: :: :: d1o20a_ 394 VGLRELTTYKFVVLGEY-HV--RE------------------------------ 414 HHsearch alignment (Probability: 0.98 E-value:0.00) d1k75a_ 29 ITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVA 88 ::::::::::::::::::::::::::::::::: :::::::::: :::: :::::: d1o20a_ 25 KNKAIKKIAEKLDERRKEILEANRIDVEKARER--GVKESLVDRL--ALND---KRIDEM 77 d1k75a_ 89 VKNIETFHTAQKLP--PV-DVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATP 145 :::::::::::::: :: ::::::::::::::::::::::::: :::::::::::: d1o20a_ 78 IKACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYE----SRPNVTVETTIL 133 d1k75a_ 146 ASIAGCKKVVLCSPPPIADEILY-AA-------QLCGVQ-DVFNV--G-GAQAIAALAFG 193 :::::::::: ::::::::::: :: :::::: ::::: : :::::::::: d1o20a_ 134 ALKSGNTILL--RGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIR- 190 d1k75a_ 194 TESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDL 253 ::::::::::::::::::::::::::: :::::::::::::::::::::::::: d1o20a_ 191 --LREYLSLVIPRGGYGLISFVRDNATVP-----VLETGVGNCHIFVDESADLKKAVPVI 243 d1k75a_ 254 LSQAEHGPDSQVIL---LTPAADMARRVAEAVERQLAELPRAETA--------------- 295 ::::::::: :::: :::::::::::::::::::::::::::: d1o20a_ 244 INAKTQRPG-TCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPAT 302 d1k75a_ 296 RQALNA------SRLIVTKDLAQCVEISNQYGPEH-LIIQTRNARE---LVDSITSAGSV 345 :::::: ::::::::::::::::::::::: :::::::::: :::::: :::: d1o20a_ 303 EDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEID-AAAV 361 d1k75a_ 346 FLGDWSPESAGDYASGTNHVLPTYGYT--ATC--SSLGLADFQKRMTVQEL 392 ::: :::::::: :::::::::::: ::: ::::::::::::::::: d1o20a_ 362 YVN--ASTRFTDG--GQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLG 408