Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1k75a_ | L-histidinol dehydrogenase HisD | ALDH-like | ALDH-like | α/β |
| Hit | d1o04a_ | Aldehyde reductase (dehydrogenase), ALDH | ALDH-like | ALDH-like | α/β |
Query <-- 0.681 --> IntermediateDALI alignment (Z-score: 3.6 Raw score:473.90) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 query 1 -----------------------------dadeEVYSA---------lvvglrayvakng 22 ::::: d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknieTFHTAqklppvdvetqpgvrcqqvtrp 120 query 23 FRSVLIGLS-----GGIDSALVAAIACDALGaQNVYGVSMPSkyssdhsKGDAAELARRT 77 ::::::::: ::::::::::::::::: :::::::::: ::::::::::: d1k75a_ 121 VASVGLYIPggsapLFSTVLMLATPASIAGC-KKVVLCSPPP------iADEILYAAQLC 173 query 78 GL-NFRTVsiepmfdaymaslgltglaeenlqsrlRGTTLMAISNQ----EGHI-VLAPg 131 :: ::::: ::::::::::: :::: :::: d1k75a_ 174 GVqDVFNV--------------------------gGAQAIAALAFGtesvPKVDkIFGP- 206 query 132 nkselavgysTLYGDSVG----------AYGPikdvyktsifrlaewrnraaaergqtpp 181 :::::::: :::: d1k75a_ 207 ---------gNAFVTEAKrqvsqrldgaAIDM-----------------pagpsevlvia 240 query 182 ipeasitkpdyPVLD-------aiLELYvdrdtgADAIVAaGYDREL--------vvKTL 226 :::: :::: :::::: :::::: ::: d1k75a_ 241 dsgatpdfvasDLLSqaehgpdsqVILLtpaadmARRVAE-AVERQLaelpraetarQAL 299 query 227 RMvdtaeykrrqyppgtkisAKGF------------------------------------ 250 :: :::: d1k75a_ 300 NAsrlivtkdlaqcveisnqYGPEhliiqtrnarelvdsitsagsvflgdwspesagdya 359 query 251 ----------GKDR---------------------------------------------- 254 :::: d1k75a_ 360 sgtnhvlptyGYTAtcsslgladfqkrmtvqelskegfsalastietlaaaerltahkna 419 query 255 rlpitnrwregh 266 d1k75a_ 420 vtlrvnalkeqa 431 FAST alignment (Normalized score: 1.61 Raw score:543.70) query 1 DADEEVYSALVVGLRAYVAKNG-------------------------------------- 22 d1k75a_ 1 ----------------------NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILD 38 query 23 ------------------------------------------------------------ 23 d1k75a_ 39 NVKARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTA 98 query 23 ----------------------FRSVLIGLSG--------GIDSALVAAIACDALGAQNV 52 ::::::: ::::::::::::: :::::: d1k75a_ 99 QKLPPVDVETQPGVRCQQVTRPVASVGLY---IPGGSAPLFSTVLMLATPASI-AGCKKV 154 query 53 YGVSMPSKYSSDHSKGDAAELARRTGLN---FRTVSIEPMFDAYMASLGLTGLAEENLQ- 108 :: :::::::::::::::: :::: d1k75a_ 155 VL--CSPPPIADEILYAAQL--------CGVQDVF------------------------N 180 query 109 ---------------------------SRLRGTTLMAISNQE---GHIVLAPGNKSELAV 138 ::::::::::::: :::: d1k75a_ 181 VGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQ--RLDGAAI----------- 227 query 139 GYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAI 198 d1k75a_ 228 ------------------------------------------------------------ 228 query 199 LELYVDRDTGADAI------------VAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKIS 246 ::::::::::::::::::: d1k75a_ 228 --------------DMPAGPSEVLVIADSGATPDFVASDLLSQAE--------------- 258 query 247 AKGFGKDRRLPITNRWREGH---------------------------------------- 266 d1k75a_ 259 --------------------HGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQA 298 query 267 ------------------------------------------------------------ 267 d1k75a_ 299 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 358 query 267 ------------------------------------------------------------ 267 d1k75a_ 359 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 418 query 267 ------------- 267 d1k75a_ 419 AVTLRVNALKEQA 431 TMalign alignment (TM-score: 0.41 Raw score:108.12) query 1 ------------------------------------------------------------ 1 d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 query 1 -----------------------------DADEEVYSALVVGL---------------RA 16 :::::::::::: d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAV--KNIETFHTAQKLPPVDVETQPGVRCQQ-- 116 query 17 YVAKNGFRSVLIGLS----GGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAE 72 ::::::::::::: ::::::::::::::::::::::::::: : ::::::: d1k75a_ 117 --VTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP-----P-IADEILY 168 query 73 LARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAIS--NQEGHIVLAP 130 :::::::::::::: :::::::::::: :::::::::: d1k75a_ 169 AAQLCGVQDVFNVG----------------------GAQAIAALAFGTESVPKVDKIFGP 206 query 131 GNKSELAVGYSTLYGDS-V----------GAYGPIK-DVYK-------------TSIFRL 165 : :::::: : ::::::: ::: d1k75a_ 207 G----------NAFVTEAKRQVSQRLDGAAIDMPAGP-SEVLVIADSGATPDFV------ 249 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAI-----LELYVDRDTGADAIVAAGYD-R 219 :::::::: :::: :::::::::::::: : d1k75a_ 250 -------------------------ASDLLSQAEHGPDSQVI--LLTPAADMARRVAEAV 282 query 220 E------------L-VVKTLR----------------MVDTAE--YKR------------ 236 : : :::::: : : d1k75a_ 283 ERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQ-----YGP--EHLIIQTRNAREL 335 query 237 ------RQYPPGTKISA--------------------KG-F-GKD--------------- 253 ::::: :: : ::: d1k75a_ 336 VDSITS------AGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV 389 query 254 ------------------------------------------RRLPITNRWREGH 266 d1k75a_ 390 QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA------------- 431 HHsearch alignment (Probability: 0.01 E-value:0.21) query 65 HSKGDAAELARRTGLNFRTVSIEPMFDAYMAS 96 :::::::::::::::::::::::::::::::: d1k75a_ 308 KDLAQCVEISNQYGPEHLIIQTRNARELVDSI 339
Intermediate <-- 1.944 --> HitDALI alignment (Z-score: 14.8 Raw score:2113.40) d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfDKTT- 59 :::: d1o04a_ 1 ---------------------------avpapnqqpevfcnqifinnewhdavsrKTFPt 33 d1k75a_ 60 -----------VTAL-------------------------------kvsaeeiaaasERL 77 :::: ::: d1o04a_ 34 vnpstgevicqVAEGdkedvdkavkaaraafqlgspwrrmdashrgrllnrladlieRDR 93 d1k75a_ 78 SDEL--------------KQAMAVAVKNIETFHTAQ--KLPPVDVETQPGVRCQQVTRPV 121 :::: :::::::::::::::::: :::::::::::::::::::::: d1o04a_ 94 TYLAaletldngkpyvisYLVDLDMVLKCLRYYAGWadKYHGKTIPIDGDFFSYTRHEPV 153 d1k75a_ 122 ASVGLYIPGgsaPLFSTVLMLATPASIAGCkKVVLCSPPPIADEILYAAQLC-------g 174 ::::::::: :::::::::::::::::: ::::::::::::::::::::: d1o04a_ 154 GVCGQIIPW--nFPLLMQAWKLGPALATGN-VVVMKVAEQTPLTALYVANLIkeagfppg 210 d1k75a_ 175 vQDVFNVGGAQAIAALAFGtesvpKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGpS 234 :::::::::::::::::: :::::::::::::::::::::::::::::::::: : d1o04a_ 211 vVNIVPGFGPTAGAAIASH----eDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELG-G 265 d1k75a_ 235 EVLVIADSGATPDFVASDLLSQ-AEHGPD---SQVILLTPAAdMARRVAEAVERQLAELP 290 :::::::::::::::::::::: :::::: :::::::::: ::::::::::::::::: d1o04a_ 266 KSPNIIMSDADMDWAVEQAHFAlFFNQGQcscAGSRTFVQED-IYDEFVERSVARAKSRV 324 d1k75a_ 291 R------------------------------------------------aETAR------ 296 : :::: d1o04a_ 325 VgnpfdskteqgpqvdetqfkkilgyintgkqegakllcgggiaadrgyfIQPTvfgdvq 384 d1k75a_ 297 -----------QALNasRLIVTKDLAQCVEISNQY-gPEHLIIQTR---NARELVDSItS 341 :::: :::::::::::::::::: ::::::::: ::::::::: : d1o04a_ 385 dgmtiakeeifGPVM--QILKFKTIEEVVGRANNStyGLAAAVFTKdldKANYLSQAL-Q 441 d1k75a_ 342 AGSVFLGdwsPESAGdyASGTNHvLPTYGYtatCSSL----GLADFQKRMTVQELSKEGF 397 ::::::: ::::: :::::: :::::: :::: ::::::::::::::::::: d1o04a_ 442 AGTVWVN---CYDVF--GAQSPF-GGYKMS--gSGRElgeyGLQAYTEVKTVTVKVPQKN 493 d1k75a_ 398 salastietlaaaerltahknavtlrvnalkeqa 431 d1o04a_ 494 ---------------------------------s 494 FAST alignment (Normalized score: 8.07 Raw score:3725.00) d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 d1o04a_ 1 ------------------------------------------------------------ 1 d1k75a_ 61 TALKVSAEEIAAASE--------------------------------------------- 75 d1o04a_ 1 ---------------AVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQV 45 d1k75a_ 76 -----------------------------------------------------------R 76 : d1o04a_ 46 AEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNG 105 d1k75a_ 77 LSDELK-QAMAVAVKNIETFHTAQK---LPPVDVETQPGVRCQQVTRPVASVGLYIPGGS 132 :::::: ::::::::::::::::: ::::::::::::::::::::::::::::: d1o04a_ 106 KPYVISYLVDLDMVLKCLRYYAGW-ADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIP--- 161 d1k75a_ 133 AP---LFSTVLMLATPASIAGCKKVVLCSPPPI--ADEILYAAQLCGV----------QD 177 :::::::::::::::: ::::::::: :::::::::: :: d1o04a_ 162 --WNFPLLMQAWKLGPALATG-NVVVMKVAE--QTPLTALYVANL---IKEAGFPPGVVN 213 d1k75a_ 178 VFNVGGAQAIAALAFGTESVP---KVDKIFGPGNAFVTEAKRQVSQRL--DGAAIDMPAG 232 :::::::::::::: :::::::::::::::::::::: ::::: :::: d1o04a_ 214 IVPGFGPTAGAAIA-------SHEDVDKVAFTGSTEIGRVIQVAAG--SSNLKRV-TLEL 263 d1k75a_ 233 PSEVLVIADSGATPDFVASDLLSQAEHGPDSQ-----------VILLTPAADMARRVAEA 281 ::::::::::::::::::::::::: ::::: ::::::::::: d1o04a_ 264 GGKSPNIIMSDADMDWAVEQAHFAL-------FFNQGQCSCAGSRTFV-QEDIYDEFVER 315 d1k75a_ 282 VERQLAELPR--------------------AETARQAL---------------------- 299 :::::::: :::::::: d1o04a_ 316 SVARAKSR--VVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGY 373 d1k75a_ 300 -----------------------NASRLIVTKDLAQCVEISNQYG--PEHLIIQTR---- 330 ::::::::::::::::::::: :::::::: d1o04a_ 374 FIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNS-TYGLAAAVFT-KDLD 431 d1k75a_ 331 NARELVDSITSAGSVFLGDWSPESAGDYAS----GTNHVLPTYGYTAT-----CSSL--- 378 ::::::::: ::::::: :::: :::::: :::: d1o04a_ 432 KANYLSQAL-QAGTVWV---NCYD------VFGAQSPFGG--------YKMSGSGRELGE 473 d1k75a_ 379 -GLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA--- 431 ::::::::::::::::: d1o04a_ 474 YGLQAYTEVKTVTVKVPQ------------------------------------KNS 494 TMalign alignment (TM-score: 0.59 Raw score:253.91) d1k75a_ 1 ------------------------NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDI 36 d1o04a_ 1 AVPAPNQQPEVFCNQIFINNEWHD------------------------------------ 24 d1k75a_ 37 LDNVKARGDEALREYSA--------KFD-KTTVTA---LK-VS----------------- 66 :: :::::: : :::::: :: :: d1o04a_ 25 --------AV-SRKTFPTVNPSTGE--VICQVAEGDKEDVDKAVKAARAAFQLGSPWRRM 73 d1k75a_ 67 --------------AEEIA--AASERLSD----------E-LKQAMAVAVKNIETFH-TA 98 :: ::::::: : :::::::::::::::: :: d1o04a_ 74 DASHRGRLLNRLAD---LIER-DRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGW 129 d1k75a_ 99 Q-KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLC 157 : ::::::::::::::::::::::::::::::: ::::::::::::::::::: ::::: d1o04a_ 130 ADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPW--NFPLLMQAWKLGPALATGN-VVVMK 186 d1k75a_ 158 SPPPIADEILYAAQLC----G---VQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAF 210 :::::::::::::::: : ::::::::::::::::::: ::::::::::::: d1o04a_ 187 VAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASH----EDVDKVAFTGSTE 242 d1k75a_ 211 VTEAKRQVSQRLDGAAIDMPAGPSEVLVIAD-SGA---TPDFVASDLLSQAEHGPDSQVI 266 ::::::::::::::::::::: ::::::::: ::: :::::::::::::::::::::: d1o04a_ 243 IGRVIQVAAGSSNLKRVTLEL-GGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSR 301 d1k75a_ 267 LLTPAADMARRVAEAVERQLA-ELP-----------RA-----E--TA-RQ--A------ 298 ::: ::::::::::::::::: ::: :: : :: :: : d1o04a_ 302 TFV-QEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAK 360 d1k75a_ 299 -------------------L--------NA---------SRLIVTKDLAQCVEISNQY-G 321 : :: :::::::: :::::::::: : d1o04a_ 361 LLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTI-EEVVGRANNSTY 419 d1k75a_ 322 PEHLIIQTRNAR-EL-VDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSL- 378 :::::::::::: :: :::::::::::::: :: :: ::::::::::::: :::: d1o04a_ 420 GLAAAVFTKDLDKANYLSQALQAGTVWVNC--YD-VF---GAQSPFGGYKMSG--SGREL 471 d1k75a_ 379 ---GLADFQKRMTVQELSKEGF-SALASTIETLAAAERLTAHKNAVTLRVNALKEQA 431 ::::::::::::::::::: d1o04a_ 472 GEYGLQAYTEVKTVTVKVPQKNS---------------------------------- 494 HHsearch alignment (Probability: 0.97 E-value:0.00) d1k75a_ 84 AMAVAVKNIETFHTAQKLPPV-DVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLM- 141 ::::::::::::::::::::: :::::::::::::::::::::::::: :::::::: d1o04a_ 115 DLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPW---NFPLLMQAW 171 d1k75a_ 142 LATPASIAGCKKVVLCSPPPIADEILY----AAQLCGV-Q---DVFNVGGAQAIAALAFG 193 ::::::::::: :::::::::::::: ::::::: : ::::::::::::::: d1o04a_ 172 KLGPALATGNV--VVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIA-- 227 d1k75a_ 194 TESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDL 253 ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: d1o04a_ 228 --SHEDVDKVAFTGSTEIGRVIQVAAGSSNL-KRVTLELGGKSPNIIMSDADMDWAVEQA 284 d1k75a_ 254 LSQAEHGPDS-----QVILLTPA--ADMARRVAEAVERQLAEL--------------PRA 292 :::::::::: :::::::: :::::::::::::::::: ::: d1o04a_ 285 HFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQF 344 d1k75a_ 293 ET----ARQALN-----------------------------------------ASRLIVT 307 :: :::::: ::::::: d1o04a_ 345 KKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKF 404 d1k75a_ 308 KDLAQCVEISNQYG-PEHLIIQTRNARELVD--SITSAGSVFLGDWSPESAGDYASGTNH 364 :::::::::::::: :::::::::::::::: :::::::::::::::::::::::: d1o04a_ 405 KTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGG--- 461 d1k75a_ 365 VLPTYGYTATCSSLGLADFQKRMTVQE 391 :::::::::::::::::::::::::: d1o04a_ 462 -YKMSGSGRELGEYGLQAYTEVKTVTV 487