Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1mopa_ | Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) | Nucleotidylyl transferase | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1k4ka_ | Nicotinamide mononucleotide (NMN) adenylyltransferase | Nucleotidylyl transferase | Adenine nucleotide alpha hydrolase-like | α/β |
Query <-- 0.714 --> IntermediateDALI alignment (Z-score: 5.8 Raw score:745.80) query 1 -------dadeevysalvvglrayvaKNGFRSVLIGL-SGGI-DSALVAAIACDALgaqN 51 ::::::::::: :::: ::::::::::::: : d1mopa_ 1 ipafhpgelnvysapgdvadvsralrLTGRRVMLVPTmGALHeGHLALVRAAKRVP-gsV 59 query 52 VYGVSMPSK---------ysSDHSKGDAAELARRTGL-NFRTVSIEPMFDAYMA------ 95 ::::::::: ::::::::::::::::: :::::::::::::::: d1mopa_ 60 VVVSIFVNPmqfgaggdldaYPRTPDDDLAQLRAEGVeIAFTPTTAAMYPDGLRttvqpg 119 query 96 ----slgltgLAEENLQSRLRGTTLMAISNqeGHIVLAPGNkselavGYST--------l 143 :::::::::::::::::::: ::::::::: :::: d1mopa_ 120 plaaeleggpRPTHFAGVLTVVLKLLQIVR--PDRVFFGEK-----dYQQLvlirqlvad 172 query 144 ygdsvgAYGPiKDVY---kTSIFrlaewrnraaaergqtppipeaSITK-------pdYP 193 :::: :::: :::: :::: :: d1mopa_ 173 fnldvaVVGV-PTVReadgLAMS----------------------SRNRyldpaqraaAV 209 query 194 VLDAILELYvDRDT------GADAIVaAGYD---relvvKTLRmvDTAEYkrrqyppgtk 244 ::::::::: :::: :::::: :::: :::: ::::: d1mopa_ 210 ALSAALTAA-AHAAtagaqaALDAAR-AVLDaapgvavdYLEL--RDIGL---------- 255 query 245 isakgfgkdrrlpITNRWR-----------------------egh 266 :::::: d1mopa_ 256 ------------gPMPLNGsgrllvaarlgttrlldniaieigtf 288 FAST alignment (Normalized score: 3.14 Raw score:869.40) query 1 DADEEVYSALVVGLRAYVAKNGF------------------------------RSVLIGL 30 ::::::: d1mopa_ 1 -----------------------IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPT 37 query 31 S--GGIDSALVAAIACDALGAQ--NVYGVSMPS-----------KYSSDHSKGDAAELAR 75 : :::::::::::::::: :::::::: ::::: :::::::::: d1mopa_ 38 MGALHEGHLALVRAAKRVP---GSVVVVSIFV-NPMQFGAGGDLDAYPR-TPDDDLAQLR 92 query 76 RTGL-NFRTVSIEPM-FDAYMASLGL------------------TGLAEENLQSRLRGTT 115 :::: ::::: :::: :::::: :::::::::::::::: d1mopa_ 93 AEGVEIAFTP-TTAAMYPDGLR----TTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQI 147 query 116 LMAISNQEG---HIVLAPGNKSELAVGYSTLYGDSVG----------------------A 150 :::::: : d1mopa_ 148 ---------VRPDRVFFG-------------------EKDYQQLVLIRQLVADFNLDVAV 179 query 151 YGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP-------------------- 190 ::: d1mopa_ 180 VGV-------------------------------------PTVREADGLAMSSRNRYLDP 202 query 191 --------DYPVLDAILELYVDRDTGADAIVAAG-----YDRELVVKTLRMVDTAEYKRR 237 ::::::::: :::::::::::::: d1mopa_ 203 AQRAAAVALSAALTAAA-----------------HAATAGAQAALDAARAVLD------- 238 query 238 QYPPGTKISAKGFGKDRRLPITNRWREGH------------------------------- 266 d1mopa_ 239 -----------------------------AAPGVAVDYLELRDIGLGPMPLNGSGRLLVA 269 query 267 ------------------- 267 d1mopa_ 270 ARLGTTRLLDNIAIEIGTF 288 TMalign alignment (TM-score: 0.50 Raw score:134.27) query 1 ----------------------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLSG 32 ::::::::::: d1mopa_ 1 IPAFHPGELNVYSAPGDVADVSRALRLT---------------------GRRVMLVPTMG 39 query 33 -GI-DSALVAAIACDALGAQNVYGVSMPSK--------YS-SDHSKGDAAELARRTGL-N 80 :: :::::::::: ::::::::::::::: :: ::::::::::::::::: : d1mopa_ 40 ALHEGHLALVRAAK-RVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEI 98 query 81 FRTVSIEPMFDAYMASL-GL-----------TGLAEENLQSRLRGTTLMAISNQEGHIVL 128 ::::::::::::::::: : ::::::::::::::::::::: ::::: d1mopa_ 99 AFTPTTAAMYPDGLRTTV-QPGPLAAELEGG-PRPTHFAGVLTVVLKLLQIVR--PDRVF 154 query 129 APGNKSELAVGYSTLYGDSVG-----------AYGPIKDVYKTSIFRLAEWRNRAAAERG 177 :::: :: : : ::::: ::::: :::::::::: d1mopa_ 155 FGEK--DY--Q--Q--LVLIRQLVADFNLDVAVVGVP--TVREADGLAM----------- 193 query 178 QTPPIPEASITK-----P--DYPVLDAILELYVDRD-----TGADAIVAAGYDRE--LVV 223 ::::: : :::::::::::::::: :::::::: ::::: ::: d1mopa_ 194 -------SSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARA-VLDAAPGVAV 245 query 224 KTLRMVDTAEYKRR----------------------QYPPGTKISAKGFGKDRR--LPIT 259 ::: :::::::::: :::: :: d1mopa_ 246 DYL-ELRDIGLGPMPLNGSGRLLVAARLGTTRLLDN----------IAIE--IGTF---- 288 query 260 NRWREGH 266 d1mopa_ 289 ------- 289 HHsearch alignment (Probability: 0.01 E-value:0.62) query 53 YGVSMPSKYSSDHSKGDAAELARRT 77 ::::::::::::::::::::::::: d1mopa_ 191 LAMSSRNRYLDPAQRAAAVALSAAL 215
Intermediate <-- 1.362 --> HitDALI alignment (Z-score: 6.1 Raw score:669.70) d1mopa_ 1 ipafhpgelnvysapgdvadvsralrlTGRRVMLVPTMG-ALHEGHLALVRAAKRVPGS- 58 :::::::::::: ::::::::::::::::::: d1k4ka_ 1 ---------------------------MKSLQALFGGTFdPVHYGHLKPVETLANLIGLt 33 d1mopa_ 59 VVVVSIFVnpmQFGAggdLDAYPR---TPDDDLAQLRAEGVEIAFTP--TTAAMypdglr 113 :::::::: :::: :::::: :::::::::::::::::::: ::::: d1k4ka_ 34 RVTIIPNN--vPPHR---PQPEANsvqRKHMLELAIADKPLFTLDERelKRNAP------ 82 d1mopa_ 114 ttvqpgplaaeleggprpthfagvlTVVLKLLQIVR-------pDRVFFGEKDYQQLVli 166 ::::::::::: :::::::::::::: d1k4ka_ 83 -------------------------SYTAQTLKEWRqeqgpdvpLAFIIGQDSLLTFP-t 116 d1mopa_ 167 rQLVADfnLDVAVVGVPT------------------------------------vreadg 190 ::::: :::::::::: d1k4ka_ 117 wYEYETilDNAHLIVCRRpgyplemaqpqyqqwledhlthnpedlhlqpagkiylaetpw 176 d1mopa_ 191 lAMSSR-NRYL-DPAQRaaavalsaaltaaahaatagaqaaldaaravldaapgvavdyl 248 ::::: :::: ::::: d1k4ka_ 177 fNISATiIRERlQNGES------------------------------------------- 193 d1mopa_ 249 elrdiglgpmplngsgrllvaarlgttrlldniaieigtf 288 d1k4ka_ 194 --------------------cedllpepvltyinqqglyr 213 FAST alignment (Normalized score: 3.50 Raw score:866.00) d1mopa_ 1 IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMG-ALHEGHLALVRAAKRVPG-- 57 :::::::::::: :::::: :::::: d1k4ka_ 1 ---------------------------MKSLQALFGGTFDPVHYGH---LKPVET---LA 27 d1mopa_ 58 -----SVVVVSI-FVNPMQFGAGGDLDAYPR-------TPDDDLAQLRAEGV-------E 97 ::::::: :::: ::::::::::: : d1k4ka_ 28 NLIGLTRVTIIPNNVPP--------------HRPQPEANSVQRKHMLEL---AIADKPLF 70 d1mopa_ 98 IAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFA----------GVLTVVLKLLQI 147 ::: :::::::::::: d1k4ka_ 71 TLD-----------------------------------ERELKRNAPSYTAQTLKEWRQE 95 d1mopa_ 148 VRP------DRVFFGEKDYQ--------QLVLIRQLVADFNLDVAVVGVPTVREADGL-- 191 ::::::::: ::::::: ::::::: d1k4ka_ 96 ---QGPDVPLAFIIGQDS--LLTFPTWYEYETILD-------NAHLIVC---------RR 134 d1mopa_ 192 -------------------------------------------AMSSRNRYLDPAQRAAA 208 :::::: d1k4ka_ 135 PGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATI----------- 183 d1mopa_ 209 VALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLV 268 d1k4ka_ 184 ------------------------------------------------------------ 184 d1mopa_ 269 AARLGTTRLLDNIAIEIGTF------------------------------ 288 d1k4ka_ 184 --------------------IRERLQNGESCEDLLPEPVLTYINQQGLYR 213 TMalign alignment (TM-score: 0.37 Raw score:105.89) d1mopa_ 1 IPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMG-ALHEGHLALVRAAKR-VPGS 58 :: :::::::::: ::::::::::::::: :::: d1k4ka_ 1 --------------------------MK-SLQALFGGTFDPVHYGHLKPVETLANLIGLT 33 d1mopa_ 59 VVVVSIFVNPMQFGAGGDLDAYPR---TPDDDLAQLRAEGVEIAFT-P--TTAAMY--PD 110 :::::::::: : :: : ::::: ::::::::::::::::::: : :::::: d1k4ka_ 34 RVTIIPNNVP--P-HR-P-QPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTA-- 86 d1mopa_ 111 G------------------------LRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQ 146 : :: :::: :: :::::: d1k4ka_ 87 QTLKEWRQEQGPDVPLAFIIGQDSL---------LT----------FPTW-YE-YETILD 125 d1mopa_ 147 IVRPDRVFFGEK-DYQQLVLI---RQLVADFN-------------LDVAVVGVPTVREAD 189 : :: ::::::: :: :::: :::::::: ::::::::::: d1k4ka_ 126 N-AH-LIVCRRPG-YP-LEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWF---- 177 d1mopa_ 190 GLAMSSRN-RYL-DPAQRA--------------------AAVALSAALTAAAHAATAGAQ 227 :::::: ::: ::: :: d1k4ka_ 178 --NISATIIRERLQNG-ESCEDLLPEPVLTYINQQGLYR--------------------- 213 d1mopa_ 228 AALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGT 287 d1k4ka_ 214 ------------------------------------------------------------ 214 d1mopa_ 288 F 288 d1k4ka_ 214 - 214 HHsearch alignment (Probability: 0.63 E-value:0.00) d1mopa_ 30 RRVMLVP-TMGALHEGHLALVRAAKRVPG-SVVVVSIFVNPMQFGAGGDLDAYPRTPDDD 87 ::::::: ::::::::::::::::::::: ::::::: :::::: ::::::::::: d1k4ka_ 3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIP----NNVPPH--RPQPEANSVQR 56 d1mopa_ 88 LAQLRAEGVE-IAFTPTTAAMYPD 110 :::::::::: ::::::::::::: d1k4ka_ 57 KHMLELAIADKPLFTLDERELKRN 80