Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1efpa1 | Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1k75a_ | L-histidinol dehydrogenase HisD | ALDH-like | ALDH-like | α/β |
Query <-- 0.729 --> IntermediateDALI alignment (Z-score: 4.7 Raw score:461.40) query 1 dadeevysalvvglrayvakngfrSVLIGLS------gGIDSALVAAIACdALGAqnVYG 54 ::::::: :::::::::::: :::: ::: d1efpa1 1 ------------------------AVLLLGEvtngalnRDATAKAVAAVK-ALGD--VTV 33 query 55 VSMPSKyssDHSKGDAAELarRTGLNFRTVSiEPMFdaymaslgltglaeenlQSRL--R 112 :::::: :::::::::: :::::::::: :::: :::: : d1efpa1 34 LCAGAS--aKAAAEEAAKI--AGVAKVLVAE-DALY----------------gHRLAepT 72 query 113 GTTLMAISnQEGHIVLAPGnkselavgysTLYGDSVG----------------------- 149 :::::::: :::::::::: :::::::: d1efpa1 73 AALIVGLA-GDYSHIAAPA----------TTDAKNVMprvaalldvmvlsdvsaildadt 121 query 150 ---------------------AYGPIKDVyktsifrlaewrnraaaergqtpPIPEasit 188 :::::::: :::: d1efpa1 122 ferpiyagnaiqvvkskdakkVFTIRTAS--------------------fdaAGEG---- 157 query 189 kpdypvldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisak 248 d1efpa1 158 ----------------------------------------------------gtapvtet 165 query 249 gfgkdrrlpitnrwregh 266 d1efpa1 166 aaaadpglsswvadevae 183 FAST alignment (Normalized score: 2.23 Raw score:493.20) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGID--------SALVAAIACDALGAQ-- 50 ::::: ::::::::::: d1efpa1 1 ------------------------AVLLL------GEVTNGALNRDATAKAVAA----VK 26 query 51 ---NVYGVSMPSKYSSDH--SKGDAAELARR-TGL-NFRTVSIEPMFDAYMASLGLTGLA 103 ::::::: ::::::::::: ::: ::::::: d1efpa1 27 ALGDVTVLCA--------GASAKAAAEEAAKIAGVAKVLVAED----------------- 61 query 104 EENL------QSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDV 157 :::::::::::::::: ::::: d1efpa1 62 ----ALYGHRLAEPTAALIVGLAGDY-SHIAA---------------------------- 88 query 158 YKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGY 217 d1efpa1 89 ------------------------------------------------------------ 89 query 218 DRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH----------- 266 d1efpa1 89 -------------------------------------------------PATTDAKNVMP 99 query 267 ------------------------------------------------------------ 267 d1efpa1 100 RVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGT 159 query 267 ------------------------ 267 d1efpa1 160 APVTETAAAADPGLSSWVADEVAE 183 TMalign alignment (TM-score: 0.34 Raw score:89.61) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGL-S----GG-IDSALVAAIACDALGAQNVYG 54 :::::: : :: ::::::::::: ::: : ::: d1efpa1 1 ------------------------AVLLLGEVTNGALNRDATAKAVAAVK-ALG-D-VTV 33 query 55 VSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSR-LRG 113 :::::: ::: :::::::: :::::::::::: :: :: ::: ::: d1efpa1 34 LCAGAS-AKA-AAEEAAKI--AGVAKVLVAEDA-LY-------------GH--RLAEPTA 73 query 114 TTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVG------------------------ 149 ::::::: ::::::::::: :: ::::: d1efpa1 74 ALIVGLA-GDYSHIAAPAT---------TD-AKNVMPRVAALLDVMVLSDVSAILDADTF 122 query 150 --------------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPE----- 184 :::::: : :: :: : ::: d1efpa1 123 ERPIYAGNAIQVVKSKDAKKVFTIRT-A---SF--DA---A-----------GEGGTAPV 162 query 185 ---------------------ASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVV 223 d1efpa1 163 TETAAAADPGLSSWVADEVAE--------------------------------------- 183 query 224 KTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1efpa1 184 ------------------------------------------- 184 HHsearch alignment (Probability: 0.02 E-value:0.18) query 27 LIGLSGGIDSALVAAIACDALGA--QNVYGVSMPSKYSSDHSKGDAAELARRTGLNF 81 ::::::::::::::::::::::: ::::::::: :::::::::::::::::::: d1efpa1 56 VLVAEDALYGHRLAEPTAALIVGLAGDYSHIAAP---ATTDAKNVMPRVAALLDVMV 109
Intermediate <-- 1.071 --> HitDALI alignment (Z-score: 5.4 Raw score:467.50) d1efpa1 1 ------------------------------------------------------------ 1 d1k75a_ 1 ntiidwnsctaeqqrqllmrpaisasesitrtvndildnvkargdealreysakfdkttv 60 d1efpa1 1 ------------------------------------------------------------ 1 d1k75a_ 61 talkvsaeeiaaaserlsdelkqamavavknietfhtaqklppvdvetqpgvrcqqvtrp 120 d1efpa1 1 --AVLLLGEVTNGAlNRDATAKAVAAVK--ALGDVTVLCAGaSAKAAAEEAAKIAGVAKV 56 :::::::::::: ::::::::::::: ::::::::::: :::::::::::::::::: d1k75a_ 121 vaSVGLYIPGGSAP-LFSTVLMLATPASiaGCKKVVLCSPP-PIADEILYAAQLCGVQDV 178 d1efpa1 57 LVAedalyghrlaepTAALIVGLAG------DYSHIAApattdAKNVMPRVAALLDVmvl 110 ::: :::::::::: ::::::: :::::::::::::: d1k75a_ 179 FNV-----------gGAQAIAALAFgtesvpKVDKIFG----pGNAFVTEAKRQVSQ--- 220 d1efpa1 111 sdvsaildadtferpiyagnaiqvvkskdaKKVF-------------------------- 144 :::: d1k75a_ 221 --------------------------rldgAAIDmpagpsevlviadsgatpdfvasdll 254 d1efpa1 145 ------------------------------------------------------------ 145 d1k75a_ 255 sqaehgpdsqvilltpaadmarrvaeaverqlaelpraetarqalnasrlivtkdlaqcv 314 d1efpa1 145 ------------------------------------------------------------ 145 d1k75a_ 315 eisnqygpehliiqtrnarelvdsitsagsvflgdwspesagdyasgtnhvlptygytat 374 d1efpa1 145 ------------------tirtasfdaageggtapvtetaaaadpglsswvadevae 183 d1k75a_ 375 csslgladfqkrmtvqelskegfsalastietlaaaerltahknavtlrvnalkeqa 431 FAST alignment (Normalized score: 2.91 Raw score:817.70) d1efpa1 1 ------------------------------------------------------------ 1 d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 d1efpa1 1 ------------------------------------------------------------ 1 d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRP 120 d1efpa1 1 --AVLLLGEVTNGALNRDATAKAVAAVK--ALGDVTVLCAGAS-AKAAAEEAAKIAGVAK 55 ::::::::: :::::::::::::::: :::::::: :::: :::::::::: ::::: d1k75a_ 121 VASVGLYIPGG-SAPLFSTVLMLATPASIAGCKKVVLC-SPPPIADEILYAAQL-CGVQD 177 d1efpa1 56 VLVAEDALYGHRL---AEPTAALIVGLAG-------DYSHIAAPA-TTDAKNVMPRVAAL 104 :: ::::::::: ::::: ::: ::::::::::::: d1k75a_ 178 VF-----------NVGGAQAIAALA----FGTESVPKVDKI-FGPGNAFVTEAKRQVSQ- 220 d1efpa1 105 L---DVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAP 161 :::: d1k75a_ 221 -RLDGAAI---------------------------------------------------- 227 d1efpa1 162 VTETAAAADPGLSSWVADEVAE-------------------------------------- 183 d1k75a_ 228 ----------------------DMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQV 265 d1efpa1 184 ------------------------------------------------------------ 184 d1k75a_ 266 ILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHL 325 d1efpa1 184 ------------------------------------------------------------ 184 d1k75a_ 326 IIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQK 385 d1efpa1 184 ---------------------------------------------- 184 d1k75a_ 386 RMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA 431 TMalign alignment (TM-score: 0.46 Raw score:83.87) d1efpa1 1 ------------------------------------------------------------ 1 d1k75a_ 1 NTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTV 60 d1efpa1 1 ------------------------------------------------------------ 1 d1k75a_ 61 TALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRP 120 d1efpa1 1 -AVLLLGEVTNGALNRDATAKAVAAVK-ALGDVTVLCAGASAKAAAEEAAKIAGVAKVLV 58 :::::::::::::::::::::::::: ::::::::::::::::::::::::::: :::: d1k75a_ 121 VASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEILYAAQLCGV-QDVF 179 d1efpa1 59 AEDALYGHRLAEPTAALIVGL---AGDYSHIAAPATTD-AKNVMPRVAAL-LDVMVLSDV 113 :: : : : ::::::::: ::::: :::::::: ::::::::::: ::::::::: d1k75a_ 180 NV---G--G-A-QAIAALAFGTESVPKVD-KIFGPGNAFVTEAKRQVSQRLDGAAIDMPA 231 d1efpa1 114 ------------------------------------------------------------ 114 d1k75a_ 232 GPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPR 291 d1efpa1 114 ---------------------------SAILDADTFERPIYAG----------------- 129 :::: d1k75a_ 292 AETARQALNASRLIVTKDLAQCVEISN------------QYGPEHLIIQTRNARELVDSI 339 d1efpa1 130 NAI--------------------QVVKSKDAKKVFTIRTA----------SFD------- 152 ::: :::: ::: d1k75a_ 340 TSAGSVFLGDWSPESAGDYASGT-------------NHVLPTYGYTATCSSLGLADFQKR 386 d1efpa1 153 ---------------------------------------------AAGEGGTAPVTETAA 167 d1k75a_ 387 MTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA--------------- 431 d1efpa1 168 AADPGLSSWVADEVAE 183 d1k75a_ 432 ---------------- 432 HHsearch alignment (Probability: 0.24 E-value:0.02) d1efpa1 23 AAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAED 61 ::::::::::::::::::::::::::::::::::::::: d1k75a_ 145 PASIAGCKKVVLCSPPPIADEILYAAQLCGVQDVFNVGG 183