Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1im5a_ | Pyrazinamidase/nicotinamidase | Isochorismatase-like hydrolases | Isochorismatase-like hydrolases | α/β |
| Hit | d1uara1 | Sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
Query <-- 0.845 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:295.90) query 1 ------------------------------------------------------------ 1 d1im5a_ 1 peealivvdmqrdfmpggalpvpegdkiipkvneyirkfkekgalivatrdwhpenhisf 60 query 1 -------------------------------------DADE-evYSALvvGLRAYVAKNG 22 :::: :::: :::::::::: d1im5a_ 61 rerggpwprhcvqntpgaefvvdlpedaviiskatepDKEAysgFEGT--DLAKILRGNG 118 query 23 FRSVLIG-lsGGIDSALVAAIACDALGaqNVYGVSMpskySSDHSKGDAAELARRTGLNF 81 ::::::: ::::::::::::::::: ::::::: :::::::::::::::::::: d1im5a_ 119 VKRVYICgvaTEYCVRATALDALKHGF--EVYLLRDavkgIKPEDEERALEEMKSRGIKI 176 query 82 RTVsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnkselavgys 141 ::: d1im5a_ 177 VQF--------------------------------------------------------- 179 query 142 tlygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailel 201 d1im5a_ 180 ------------------------------------------------------------ 180 query 202 yvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnr 261 d1im5a_ 180 ------------------------------------------------------------ 180 query 262 wregh 266 d1im5a_ 180 ----- 180 FAST alignment (Normalized score: 2.15 Raw score:469.10) query 1 DADEEVYSALV------------------------------------------------- 11 d1im5a_ 1 -----------PEEALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVAT 49 query 12 ----------------------------------------------------------VG 13 :: d1im5a_ 50 RDWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTD 109 query 14 LRAYVAKNGFRSVLIGLS----GGIDSALVAAIACDALGAQ---NVYGVSMPSKY----- 61 ::::::::::::::: :::::::::::::: ::::: d1im5a_ 110 LAKILRGNGVKRVYI---CGVATEYCVRATALDALK-----HGFEVYLL------RDAVK 155 query 62 -SSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAIS 120 ::::::::::::::::::::: d1im5a_ 156 GIKPEDEERALEEMKSRGIKIV-------------------------------------- 177 query 121 NQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTP 180 d1im5a_ 178 ------------------------------------------------------------ 178 query 181 PIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYP 240 d1im5a_ 178 ------------------------------------------------------------ 178 query 241 PGTKISAKGFGKDRRLPITNRWREGH-- 266 d1im5a_ 178 --------------------------QF 179 TMalign alignment (TM-score: 0.30 Raw score:81.01) query 1 --------------DADE------EVYSALVVGLRAYVAKN-G-FRSVLIGLSGG----- 33 ::: ::: ::::::::::::: : ::::::::::: d1im5a_ 1 PEEALIVVDMQRDF-MPGGALPVPEGD-KIIPKVNEYIRKFKEKGALIVATRDWHPENHI 58 query 34 -----------ID-SA---LVAAIACDALGAQNVYGVSMPSKYSSDHSK---GDAAELAR 75 :: : :::::: ::: :::::::: :::::: d1im5a_ 59 SFRERGGPWPRHCV-QNTPGAEFVV--DLP-EDAVIISK----ATEPDKEAY-------- 102 query 76 RTGLNFRTVSIEPMFDAYMASLGLTGLAEEN-LQSRLRGTTLMAISNQ--EGHIVLAPGN 132 : ::::::::::::::: ::::::: d1im5a_ 103 ------------------------------SG-FEGTDLAKILRGNGVKR---VYICGVA 128 query 133 KSELAVGYSTLYGDS---V-GAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASIT 188 :::: ::::::::: : ::::::::::: d1im5a_ 129 TEYC--VRATALDALKHGFEVYLLRDAVKGI----------------------------- 157 query 189 KPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAK 248 :: :: :: : :::::::: ::::::: d1im5a_ 158 -------KP-ED-EE----------------------R-ALEEMKSR-GIKIVQF----- 179 query 249 GFGKDRRLPITNRWREGH 266 d1im5a_ 180 ------------------ 180 HHsearch alignment (Probability: 0.10 E-value:0.05) query 13 GLRAYVAKNGFRSVLIGL---SGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGD 69 :::::::::::::::::: ::::::::::::: :::: :::::::::::::::::: d1im5a_ 109 DLAKILRGNGVKRVYICGVATEYCVRATALDALK---HGFE-VYLLRDAVKGIKPEDEER 164 query 70 AAELARRTGLN 80 ::::::::::: d1im5a_ 165 ALEEMKSRGIK 175
Intermediate <-- 0.695 --> HitDALI alignment (Z-score: 2.5 Raw score:288.50) d1im5a_ 1 --------------------PEEALIVVDMQrdfmpggalpvpegdkiipkvnEYIRkfk 40 ::::::::::: :::: d1uara1 1 gyahpevlvstdwvqehledPKVRVLEVDED----------------illydtGHIP--- 41 d1im5a_ 41 ekgalIVATRdwhpenhisfrerggpwprhcvqntpgaefvvdlpedaviiSKATepDKE 100 ::::: :::: ::: d1uara1 42 ----gAQKID--------------------------------------wqrDFWDpvVRD 59 d1im5a_ 101 AysgfegtDLAKILRGNGV---KRVYICGVATeYCVRATALDALKHGF-EVYLLRDAVK- 155 : ::::::::::: :::::::::: ::::::::::::::: :::::::::: d1uara1 60 F---iseeEFAKLMERLGIsndTTVVLYGDKNnWWAAYAFWFFKYNGHkDVRLMNGGRQk 116 d1im5a_ 156 ---gikpedeeraleemksrgikivqf 179 d1uara1 117 wveegrplttevpsyppgryevpyrde 143 FAST alignment (Normalized score: 3.33 Raw score:533.10) d1im5a_ 1 PEEALIVVDMQRDFMPGGALPVPEGDK---------IIPKVNEYIRKFKEKG-ALIVATR 50 :::::::: :::: ::::::: d1uara1 1 ---------------------------GYAHPEVLVSTDWVQEH----LEDPKVRVLEVD 29 d1im5a_ 51 DWHPENHISFRERGGPWPRHCVQNTPGAEFVVDL----------PEDAVIISKA-----T 95 ::::::::: : d1uara1 30 ----------------------------------EDILLYDTGHIPGAQKIDW-QRDFWD 54 d1im5a_ 96 EPDKEAYSGFEGT------DLAKILRGNGV---KRVYICGVAT--EYCVRATALDALKHG 144 :::: ::::::::::: :::::::: ::::::::::::::: d1uara1 55 PVVR---------DFISEEEFAKLMERLGISNDTTVVLYGD--KNNWWAAYAFWFFKYNG 103 d1im5a_ 145 F-EVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQF------------------------ 179 : :::::: d1uara1 104 HKDVRLMN----------------------------GGRQKWVEEGRPLTTEVPSYPPGR 135 d1im5a_ 180 -------- 180 d1uara1 136 YEVPYRDE 143 TMalign alignment (TM-score: 0.36 Raw score:64.96) d1im5a_ 1 ---------PEEALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKG-ALIVATR 50 : :: :: ::::::: ::::::: d1uara1 1 GYAHPEVLV---------------------------S--TD-WV-QEHLEDPKVRVLEVD 29 d1im5a_ 51 -DWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEG-- 107 :: : ::::::::: :::::::: :::: d1uara1 30 EDI------------------L-----LYDTGHIPG--AQKIDWQR--------DFWDPV 56 d1im5a_ 108 ----T---DLAKILRG--NGVK-RVYICGVATEYCVRATALDALKHGFE-VYLLRDAVKG 156 : :::::::: :::: :::::::::::::::::::::::::: :::::::::: d1uara1 57 VRDFISEEEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQK 116 d1im5a_ 157 ---------------------------IKPEDEERALEEMKSRGIKIVQF 179 d1uara1 117 WVEEGRPLTTEVPSYPPGRYEVPYRDE----------------------- 143 HHsearch alignment (Probability: 0.03 E-value:0.11) d1im5a_ 105 FEGTDLAKILRGNGVK---RVYICGVATEYCVRATALDALKHGFE-VYLLRDAVKGI 157 :::::::::::::::: :::::::::::::::::::::::::: ::::::::::: d1uara1 61 ISEEEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKW 117