Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jmva_ | Universal stress protein A, UspA | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1n8na_ | Class B acid phosphatase | HAD-like | HAD-like | α/β |
Query <-- 1.476 --> IntermediateDALI alignment (Z-score: 6.4 Raw score:517.70) query 1 dadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALG--aqNVYGVSMP 58 ::::::::::::::::::::::::::: :::::::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGIAKrhdaKLSIIHVD 39 query 59 S------------------kysSDHSKGDAAELARRTG---lNFRTVSIepmfdaymasl 97 : :::::::::::::::: ::::::: d1jmva_ 40 VnfsdlytglidvnmssmqdriSTETQKALLDLAESVDypisEKLSGSG----------- 88 query 98 gltglaeenlqsrLRGTTLMAISNQEGH-IVLAPGNKseLAVG--YSTL----ygdsvgA 150 ::::::::::::::: :::::::: :::: :::: : d1jmva_ 89 -------------DLGQVLSDAIEQYDVdLLVTGHHQ--DFWSklMSSTrqvmntikidM 133 query 151 YGPiKDVYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgad 210 ::: :::: d1jmva_ 134 LVV-PLRD---------------------------------------------------- 140 query 211 aivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1jmva_ 141 -------------------------------------------------------- 141 FAST alignment (Normalized score: 4.82 Raw score:930.50) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------NVYG 54 ::::::::::::::::::::::::: :::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGI----AKRHDAKLSI 35 query 55 VSMPSKYSS-----------------------DHSKGDAAELAR--RTGL-NFRTVSIEP 88 :::: :::::::::::: :::: ::::: d1jmva_ 36 IHVD-----VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG---- 86 query 89 MFDAYMASLGLTGLAEENLQSR--LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLY- 144 :::::::::::::: :::::::: d1jmva_ 87 ----------------------SGDLGQVLSDAIEQYDVDLLVTGHH------------Q 112 query 145 ------------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDY 192 :::::: d1jmva_ 113 DFWSKLMSSTRQVMNTIK------------------------------------------ 130 query 193 PVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGK 252 d1jmva_ 131 ------------------------------------------------------------ 131 query 253 DRRLPITNRWREGH---------- 266 d1jmva_ 131 --------------IDMLVVPLRD 140 TMalign alignment (TM-score: 0.33 Raw score:88.21) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVSMP 58 ::::::::::::::::::::::::::: :::::::::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 query 59 SK---------------------YSSDHSKGDAAELARRT--GLNFRTVSIEPMFDAYMA 95 :: :: :::::::::::: ::::::::: d1jmva_ 40 VNFSDLYTGLIDVNMSSMQDRIS--TE-TQKALLDLAESVDYPISEKLSGS--------- 87 query 96 SLGLTGLAEENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG---- 149 : ::::::::::::::: ::::::: ::::::::: ::: :: d1jmva_ 88 ------------G--DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMS--STRQVMNTIK 130 query 150 --AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDT 207 ::: :: : :: d1jmva_ 131 IDMLV-VP-L-RD----------------------------------------------- 140 query 208 GADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1jmva_ 141 ----------------------------------------------------------- 141 HHsearch alignment (Probability: 0.05 E-value:0.16) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK 60 :::::::::::::::::::::::::::::::::::::::::::::: ::::: :::::: d1jmva_ 56 SMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQY-DVDLL--VTGHHQ 112 query 61 YSSDHSKGDAAELARRTGLNFRTVSIEP 88 :::::::::::::::::::::::::::: d1jmva_ 113 DFWSKLMSSTRQVMNTIKIDMLVVPLRD 140
Intermediate <-- 0.845 --> HitDALI alignment (Z-score: 6.1 Raw score:538.70) d1jmva_ 1 ---------------------------------MYKHILVAVD---LSEE---------- 14 :::::::::: :::: d1n8na_ 1 splnpgtnvarlaeqapihwvsvaqienslagrPPMAVGFDIDdtvLFSSpgfwrgkktf 60 d1jmva_ 15 --------------------------sPILLKKAVGIAKRHDAKLSIIHVDvnfsdlytg 48 :::::::::::::::::::::::: d1n8na_ 61 spesedylknpvfwekmnngwdefsipKEVARQLIDMHVRRGDAIFFVTGR--------- 111 d1jmva_ 49 lidvnmssmqdrISTEtqKALLDLAESVDY---PISEKLSGSG-dlgQVLSDAIEQYDVD 104 :::: :::::::::::: :::::::::: ::::::::::::: d1n8na_ 112 ----------spTKTE--TVSKTLADNFHIpatNMNPVIFAGDkpgqNTKSQWLQDKNIR 159 d1jmva_ 105 LLVTGHhqdfwsklmsstrQVMNTIKIDMLVVPLRD----------------------- 140 :::::: ::::::::::::::::: d1n8na_ 160 IFYGDS---------dndiTAARDVGARGIRILRASnstykplpqagafgeevivnsey 209 FAST alignment (Normalized score: 4.57 Raw score:780.80) d1jmva_ 1 MY-----------------------------------KHILVAVDLSEES---------- 15 :::::: d1n8na_ 1 --SPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFD-------IDDTVLFSSP 51 d1jmva_ 16 ------------------------------------PILLKKAVGIAKRHDAKLSIIHVD 39 :::::::::::::::::::::: d1n8na_ 52 GFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVT-- 109 d1jmva_ 40 VNFSDLYTGLIDVNMSSMQDRI------STETQKALLDLAESVDY---PISEKLSGSGDL 90 :::::::: :::::: :::::::: d1n8na_ 110 ----------------------GRSPTKTETVSKTL---ADNFHIPATNMNPVIFA---- 140 d1jmva_ 91 GQ-------VLSDAIEQYDVDLLVTGHHQDFWSKLMSS-TRQVMN---TIKIDMLVVPLR 139 :::::::::::::::: :::::: ::::::::::: d1n8na_ 141 --GDKPGQNTKSQWLQDKNIRIFYG-------------DSDNDITAARDVGARGIRILR- 184 d1jmva_ 140 D------------------------- 140 d1n8na_ 185 -ASNSTYKPLPQAGAFGEEVIVNSEY 209 TMalign alignment (TM-score: 0.58 Raw score:81.12) d1jmva_ 1 --------------------------------M-YKHILVAVD---LSE----------- 13 : ::::::::: ::: d1n8na_ 1 SPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTF 60 d1jmva_ 14 ------------------------ESPI-LLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG 48 :::: ::::::::::::::::::::::: d1n8na_ 61 SPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRS-------- 112 d1jmva_ 49 LIDVNMSSMQDRISTETQKALLDLAES-VDYP---ISEKLSGSGD---LGQVLSDAIEQY 101 : ::: ::::::::: :::: :::::::::: :::::::::: d1n8na_ 113 -P----------TKT---ETVSKTLADNFHIPATNMNPVIFAGDKPGQ--NTKSQWLQDK 156 d1jmva_ 102 DVDLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLR-D-------------------- 140 ::::::::: : ::::::::::::::::::: : d1n8na_ 157 NIRIFYGDS-------D--NDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNS 207 d1jmva_ 141 -- 141 d1n8na_ 208 EY 209 HHsearch alignment (Probability: 0.07 E-value:0.04) d1jmva_ 69 LLDLAESVDYPISEKLSGSGDLGQV 93 ::::::::::::::::::::::::: d1n8na_ 94 LIDMHVRRGDAIFFVTGRSPTKTET 118