Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jmva_ | Universal stress protein A, UspA | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1o08a_ | beta-Phosphoglucomutase | HAD-like | HAD-like | α/β |
Query <-- 1.476 --> IntermediateDALI alignment (Z-score: 6.4 Raw score:517.70) query 1 dadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALG--aqNVYGVSMP 58 ::::::::::::::::::::::::::: :::::::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGIAKrhdaKLSIIHVD 39 query 59 S------------------kysSDHSKGDAAELARRTG---lNFRTVSIepmfdaymasl 97 : :::::::::::::::: ::::::: d1jmva_ 40 VnfsdlytglidvnmssmqdriSTETQKALLDLAESVDypisEKLSGSG----------- 88 query 98 gltglaeenlqsrLRGTTLMAISNQEGH-IVLAPGNKseLAVG--YSTL----ygdsvgA 150 ::::::::::::::: :::::::: :::: :::: : d1jmva_ 89 -------------DLGQVLSDAIEQYDVdLLVTGHHQ--DFWSklMSSTrqvmntikidM 133 query 151 YGPiKDVYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgad 210 ::: :::: d1jmva_ 134 LVV-PLRD---------------------------------------------------- 140 query 211 aivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1jmva_ 141 -------------------------------------------------------- 141 FAST alignment (Normalized score: 4.82 Raw score:930.50) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------NVYG 54 ::::::::::::::::::::::::: :::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGI----AKRHDAKLSI 35 query 55 VSMPSKYSS-----------------------DHSKGDAAELAR--RTGL-NFRTVSIEP 88 :::: :::::::::::: :::: ::::: d1jmva_ 36 IHVD-----VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG---- 86 query 89 MFDAYMASLGLTGLAEENLQSR--LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLY- 144 :::::::::::::: :::::::: d1jmva_ 87 ----------------------SGDLGQVLSDAIEQYDVDLLVTGHH------------Q 112 query 145 ------------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDY 192 :::::: d1jmva_ 113 DFWSKLMSSTRQVMNTIK------------------------------------------ 130 query 193 PVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGK 252 d1jmva_ 131 ------------------------------------------------------------ 131 query 253 DRRLPITNRWREGH---------- 266 d1jmva_ 131 --------------IDMLVVPLRD 140 TMalign alignment (TM-score: 0.33 Raw score:88.21) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVSMP 58 ::::::::::::::::::::::::::: :::::::::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 query 59 SK---------------------YSSDHSKGDAAELARRT--GLNFRTVSIEPMFDAYMA 95 :: :: :::::::::::: ::::::::: d1jmva_ 40 VNFSDLYTGLIDVNMSSMQDRIS--TE-TQKALLDLAESVDYPISEKLSGS--------- 87 query 96 SLGLTGLAEENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG---- 149 : ::::::::::::::: ::::::: ::::::::: ::: :: d1jmva_ 88 ------------G--DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMS--STRQVMNTIK 130 query 150 --AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDT 207 ::: :: : :: d1jmva_ 131 IDMLV-VP-L-RD----------------------------------------------- 140 query 208 GADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1jmva_ 141 ----------------------------------------------------------- 141 HHsearch alignment (Probability: 0.05 E-value:0.16) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK 60 :::::::::::::::::::::::::::::::::::::::::::::: ::::: :::::: d1jmva_ 56 SMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQY-DVDLL--VTGHHQ 112 query 61 YSSDHSKGDAAELARRTGLNFRTVSIEP 88 :::::::::::::::::::::::::::: d1jmva_ 113 DFWSKLMSSTRQVMNTIKIDMLVVPLRD 140
Intermediate <-- 1.036 --> HitDALI alignment (Z-score: 4.9 Raw score:385.30) d1jmva_ 1 MYKHILVAVD---LSEE------------------------------------------- 14 :::::::::: :::: d1o08a_ 1 MFKAVLFDLDgviTDTAeyhfrawkalaeeigingvdrqfneqlkgvsredslqkildla 60 d1jmva_ 15 -------------------------------spilLKKAVGIAKRHDAKLSIIHVdvnfs 43 :::::::::::::::::::: d1o08a_ 61 dkkvsaeefkelakrkndnyvkmiqdvspadvypgILQLLKDLRSNKIKIALASA----- 115 d1jmva_ 44 dlytglidvnmssmqdristetqKALLDLAE--SVDYPISEKLSG---SGDL--GQVLSD 96 :::::::: :::::::::::: :::: :::::: d1o08a_ 116 ----------------------sKNGPFLLErmNLTGYFDAIADPaevAASKpaPDIFIA 153 d1jmva_ 97 AIEQYDV----DLLVTGHhqdfwsklmssTRQVMNtIKIDMLVVP--------------- 137 ::::::: ::::::: :::::: ::::::::: d1o08a_ 154 AAHAVGVapseSIGLEDS--------qagIQAIKD-SGALPIGVGrpedlgddivivpdt 204 d1jmva_ 138 --------------lrd 140 d1o08a_ 205 shytleflkevwlqkqk 221 FAST alignment (Normalized score: 2.65 Raw score:465.70) d1jmva_ 1 MYKHILVAVDLSEES--------------------------------------------- 15 :::::::: d1o08a_ 1 MFKAVLFD-------LDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSL 53 d1jmva_ 16 ---------------------------------------PILLKKAVGIAKRHDAKLSII 36 ::::::::::::::::::::: d1o08a_ 54 QKILDLADKKVSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALA 113 d1jmva_ 37 HVDVNFSDLYTGLIDVNMSSMQDRISTET--QKALLDLAESVDY----PISEKLSGSGDL 90 ::::::::::: ::::::: d1o08a_ 114 -----------------------------SASKNGPFLLERM--NLTGYFDAIAD----- 137 d1jmva_ 91 ---------------------------------GQVLSDAIEQYDVDLLVTGHHQDFWSK 117 ::::::::::::: :::: d1o08a_ 138 PAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGA-LPIG--------- 187 d1jmva_ 118 --LMSSTRQVMNTIKID----MLVVPLRD-------------------- 140 :::: :::: d1o08a_ 188 VGRPED-----------LGDDIVIV----PDTSHYTLEFLKEVWLQKQK 221 TMalign alignment (TM-score: 0.44 Raw score:61.24) d1jmva_ 1 MYKHILVAV-D--LS--------------------------------------------- 12 ::::::::: : :: d1o08a_ 1 MFKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLA 60 d1jmva_ 13 --------------------------E---ESPILLKKAVGIAKRHDAKLSIIHVDVNFS 43 : :::::::::::::::::::::::: d1o08a_ 61 DKKVSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALAS------ 114 d1jmva_ 44 DLYTGLIDVNMSSMQDRISTETQKALLDLAE---SVDY-PISEKL-----SGS------- 87 : : :: :::::: :::: :::::: ::: d1o08a_ 115 ------A-S-------------KN-GPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIA 153 d1jmva_ 88 ----------------GDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTIKI 131 ::::::::::::::::::: : ::::::::: d1o08a_ 154 AAHAVGVAPSESIGLE--DSQAGIQAIKDSGALPIGV---------G--RPEDLGDDI-- 198 d1jmva_ 132 DML-VVPL---------------RD 140 ::: :::: d1o08a_ 199 VIVPDTSHYTLEFLKEVWLQKQK-- 221 HHsearch alignment (Probability: 0.13 E-value:0.01) d1jmva_ 1 MYKHILVAVDLSEES-PIL-LKKAVGIAKRHDAK 32 ::::::::::::::: ::: :::::::::::::: d1o08a_ 1 MFKAVLFDLDGVITDTAEYHFRAWKALAEEIGIN 34