Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jmva_ | Universal stress protein A, UspA | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1a4ia2 | Tetrahydrofolate dehydrogenase/cyclohydrolase | Aminoacid dehydrogenase-like, N-terminal domain | Aminoacid dehydrogenase-like, N-terminal domain | α/β |
Query <-- 1.476 --> IntermediateDALI alignment (Z-score: 6.4 Raw score:517.70) query 1 dadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALG--aqNVYGVSMP 58 ::::::::::::::::::::::::::: :::::::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGIAKrhdaKLSIIHVD 39 query 59 S------------------kysSDHSKGDAAELARRTG---lNFRTVSIepmfdaymasl 97 : :::::::::::::::: ::::::: d1jmva_ 40 VnfsdlytglidvnmssmqdriSTETQKALLDLAESVDypisEKLSGSG----------- 88 query 98 gltglaeenlqsrLRGTTLMAISNQEGH-IVLAPGNKseLAVG--YSTL----ygdsvgA 150 ::::::::::::::: :::::::: :::: :::: : d1jmva_ 89 -------------DLGQVLSDAIEQYDVdLLVTGHHQ--DFWSklMSSTrqvmntikidM 133 query 151 YGPiKDVYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtgad 210 ::: :::: d1jmva_ 134 LVV-PLRD---------------------------------------------------- 140 query 211 aivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1jmva_ 141 -------------------------------------------------------- 141 FAST alignment (Normalized score: 4.82 Raw score:930.50) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------NVYG 54 ::::::::::::::::::::::::: :::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGI----AKRHDAKLSI 35 query 55 VSMPSKYSS-----------------------DHSKGDAAELAR--RTGL-NFRTVSIEP 88 :::: :::::::::::: :::: ::::: d1jmva_ 36 IHVD-----VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG---- 86 query 89 MFDAYMASLGLTGLAEENLQSR--LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLY- 144 :::::::::::::: :::::::: d1jmva_ 87 ----------------------SGDLGQVLSDAIEQYDVDLLVTGHH------------Q 112 query 145 ------------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDY 192 :::::: d1jmva_ 113 DFWSKLMSSTRQVMNTIK------------------------------------------ 130 query 193 PVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGK 252 d1jmva_ 131 ------------------------------------------------------------ 131 query 253 DRRLPITNRWREGH---------- 266 d1jmva_ 131 --------------IDMLVVPLRD 140 TMalign alignment (TM-score: 0.33 Raw score:88.21) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVSMP 58 ::::::::::::::::::::::::::: :::::::::: d1jmva_ 1 ---------------------MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 query 59 SK---------------------YSSDHSKGDAAELARRT--GLNFRTVSIEPMFDAYMA 95 :: :: :::::::::::: ::::::::: d1jmva_ 40 VNFSDLYTGLIDVNMSSMQDRIS--TE-TQKALLDLAESVDYPISEKLSGS--------- 87 query 96 SLGLTGLAEENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG---- 149 : ::::::::::::::: ::::::: ::::::::: ::: :: d1jmva_ 88 ------------G--DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMS--STRQVMNTIK 130 query 150 --AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDT 207 ::: :: : :: d1jmva_ 131 IDMLV-VP-L-RD----------------------------------------------- 140 query 208 GADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1jmva_ 141 ----------------------------------------------------------- 141 HHsearch alignment (Probability: 0.05 E-value:0.16) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSK 60 :::::::::::::::::::::::::::::::::::::::::::::: ::::: :::::: d1jmva_ 56 SMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQY-DVDLL--VTGHHQ 112 query 61 YSSDHSKGDAAELARRTGLNFRTVSIEP 88 :::::::::::::::::::::::::::: d1jmva_ 113 DFWSKLMSSTRQVMNTIKIDMLVVPLRD 140
Intermediate <-- 1.583 --> HitDALI alignment (Z-score: 5.6 Raw score:339.20) d1jmva_ 1 --------------------------------myKHILVAVD-LSEESPILLKKAVGIAK 27 :::::::: ::::::::::::::::: d1a4ia2 1 apaeilngkeisaqirarlknqvtqlkeqvpgftPRLAILQVgNRDDSNLYINVKLKAAE 60 d1jmva_ 28 RHDAKLSIIHVD--VNFSdlytglidvnmssmqdristetqkalldlaesvdypisekls 85 :::::::::::: :::: d1a4ia2 61 EIGIKATHIKLPrtTTES------------------------------------------ 78 d1jmva_ 86 gsgDLGQVLSDAIEQYDVDLLVTGHHqdfwsklmsSTRQVMNTIK--IDMLvvplrd 140 ::::::::::::::::::::::: :::::::::: :::: d1a4ia2 79 ---EVMKYITSLNEDSTVHGFLVQLP--ldsensiNTEEVINAIApeKDVD-----g 125 FAST alignment (Normalized score: 3.87 Raw score:511.40) d1jmva_ 1 MY----------------------------------KHILVAV-DLSEESPILLKKAVGI 25 ::::::: :::::::::::::::: d1a4ia2 1 --APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKA 58 d1jmva_ 26 AKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLS 85 :::::::::::::: d1a4ia2 59 AEEIGIKATHIKLP---------------------------------------------- 72 d1jmva_ 86 GSGD---LGQVLSDAIEQY-----DVDLLVTGHHQDFWSKLMS---------STRQVMNT 128 ::::::::::: :::::::: :::::::: d1a4ia2 73 ----RTTTESEVMKYITS-LNEDSTVHGFLVQ-----------LPLDSENSINTEEVINA 116 d1jmva_ 129 IKIDMLVVPLRD--------- 140 d1a4ia2 117 ------------IAPEKDVDG 125 TMalign alignment (TM-score: 0.45 Raw score:62.63) d1jmva_ 1 ----------------------M----------YKHILVAVD-LSEE-SPILLKKAVGIA 26 : ::::::::: :::: :::::::::::: d1a4ia2 1 APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAE 60 d1jmva_ 27 KRHDAKLSIIHVD--VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKL 84 :: :::::::::: :::: d1a4ia2 61 EI-GIKATHIKLPRTTTES----------------------------------------- 78 d1jmva_ 85 SGSGDLGQVLSDAIEQYDVDLLVTGHHQ----DFWSKLMSSTRQVMNTIK-IDMLVVPLR 139 : ::::::::::::::::::::::: :: ::::::::::: ::::: d1a4ia2 79 ---E-VMKYITSLNEDSTVHGFLVQLPLDSEN----SI-NTEEVINAIAPEKDVDG---- 125 d1jmva_ 140 D 140 d1a4ia2 126 - 126 HHsearch alignment (Probability: 0.21 E-value:0.02) d1jmva_ 9 VDLSEESPILLKKAVGI----AKRHD---AKLSIIHVDVNFSDLYTGLIDVNMSSMQDRI 61 ::::::::::::::::: ::::: ::::::::::::: d1a4ia2 6 LNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDD------------------ 47 d1jmva_ 62 STETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDL 105 :::::::::::::::::::::::::::::::::::::::::::: d1a4ia2 48 SNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 91