Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq8a_ | Hypothetical protein Rv1636 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.545 --> IntermediateDALI alignment (Z-score: 6.9 Raw score:470.90) query 1 dadeevysalvvglrayvaKNGFRSVLIGLSGGIDSALVAAIACDALG-aQNVYGVSMPS 59 ::::::::::::::::::::::::::::: :::::::::: d1tq8a_ 1 ------------------sLSAYKTVVVGTDGSDSSMRAVDRAAQIAGadAKLIIASAYL 42 query 60 KysSDHSKGDAAELARRTG------LNFRTVSIepmfdaymaslgltglaeenlqsrLRG 113 : :::::::::::::::: :::::::: ::: d1tq8a_ 43 P--TAPIYEILHDAKERAHnagaknVEERPIVG------------------------APV 76 query 114 TTLMAISNQEGH-IVLAPGNksELAVgystlygdsvgaygpikdvyktsifrlaewrnra 172 :::::::::::: ::::::: :::: d1tq8a_ 77 DALVNLADEEKAdLLVVGNV--GLST---------------------------------- 100 query 173 aaergqtppipeasitkpdypvldailelyvdrdtgadaivaagydrelvvktlrmvdta 232 d1tq8a_ 101 ------------------------------------------------------------ 101 query 233 eykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1tq8a_ 101 -------iagrllgsvpanvsrrakvdvlivhtt 127 FAST alignment (Normalized score: 4.47 Raw score:821.20) query 1 DADEEVYSALVVGLRAYVAKN---GFRSVLIGLSGGIDSALVAAIACDALGAQ-----NV 52 ::::::::::::::::::::::::: :: d1tq8a_ 1 ---------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQI----AGADAKL 35 query 53 YGVSMPSKYS----SDHSKGDAAELARRTG-LNFRTVSIEPMFDAYMASLGLTGLAEENL 107 ::::::: :::::::::::::::: ::::::::: d1tq8a_ 36 IIASAYL---PTAPIYEILHDAKERAHNAGAKNVEERPIV-------------------- 72 query 108 QSR-LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRL 165 :::::::::::::: :::::::: d1tq8a_ 73 ---GAPVDALVNLADEEKADLLVVGNV--------------------------------- 96 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKT 225 d1tq8a_ 97 ------------------------------------------------------------ 97 query 226 LRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------------- 266 d1tq8a_ 97 -----------------------------------------GLSTIAGRLLGSVPANVSR 115 query 267 ------------ 267 d1tq8a_ 116 RAKVDVLIVHTT 127 TMalign alignment (TM-score: 0.34 Raw score:89.30) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA-QNVYGVSMPS 59 ::::::::::::::::::::::::::::::: :::::::::: d1tq8a_ 1 ------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYL 42 query 60 K-YSSDHSKGDAAELARRTG------LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLR 112 : :: ::::::::::::: :::::: : : :: d1tq8a_ 43 PT--AP-IYEILHDAKERAHNAGAKNVEERPI-V--G---------------------AP 75 query 113 GTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNR 171 ::::::::::::: ::::::: : : d1tq8a_ 76 VDALVNLADEEKADLLVVGNV--G----L------------------------------- 98 query 172 AAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDT 231 : ::: : d1tq8a_ 99 -----------------------------------------------------S-TIA-G 103 query 232 AEYKRRQYPPGTKISAKG-FG------KDRRLPITNRWREGH 266 :::::: ::::::::: : : d1tq8a_ 104 RLLGSV-PANVSRRAK-VD-VLIVHTT--------------- 127 HHsearch alignment (Probability: 0.11 E-value:0.02) query 23 FRSVLIGLSGGIDSALVAAIACDAL---GAQNVYGVSMPSKYSSDHSKGDAAELARRTGL 79 ::::::::::::::::::::::::: ::: :::::::::::::::::::::::::::: d1tq8a_ 5 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKL-IIASAYLPTAPIYEILHDAKERAHNAGA 63 query 80 NFRTVSI 86 ::::::: d1tq8a_ 64 KNVEERP 70
Intermediate <-- 1.048 --> HitDALI alignment (Z-score: 6.3 Raw score:372.70) d1tq8a_ 1 ------------sLSAY------------KTVVVGTDgSDSSMRAVDRAAQIAgadAKLI 36 :::: :::::::: ::::::::::::::: :::: d1l7da1 1 agyravidgayefARAFpmmmtaagtvppARVLVFGV-GVAGLQAIATAKRLG---AVVM 56 d1tq8a_ 37 IASAylptapIYEILHDAKERAhnagaknVEERPiVGAPVDALVNLADeeKADLLVVGNV 96 :::: :::::::::::: ::::: ::::::::::::: :::::::::: d1l7da1 57 ATDV------RAATKEQVESLG-------GKFIT-VKKQAEAVLKELV--KTDIAITTAL 100 d1tq8a_ 97 GLS---------------tiagrllgsvPANVS-------rrakvdvlIVHT-------t 127 ::: ::::: :::: d1l7da1 101 IPGkpapvliteemvtkmkpgsviidlaVEAGGncplsepgkivvkhgVKIVghtnvpsr 160 FAST alignment (Normalized score: 4.87 Raw score:694.40) d1tq8a_ 1 -------------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKL 35 :::: ::::: :::::::::::::::: ::::: d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPP-ARVLV-FGVGVAGLQAIATAKR---LGAVV 55 d1tq8a_ 36 IIASAYLPTAP-IYEILHDAKERAHNAGAKNVEERP-IVGAPVDALVNLADEEKADLLVV 93 :::: :::::::::: ::::: :::::::::::::: ::::::: d1l7da1 56 MATD-------VRAATKEQVES-------LGGKF--ITVKKQAEAVLKELV--KTDIAIT 97 d1tq8a_ 94 GNVGLSTIAGRLLGSVP------------------------------------------- 110 :::: d1l7da1 98 -TALI------------PGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIV 144 d1tq8a_ 111 ---------ANVSRRAKVDVLIVHTT- 127 :::::: d1l7da1 145 VKHGVKIVGHTNVPS-----------R 160 TMalign alignment (TM-score: 0.53 Raw score:67.56) d1tq8a_ 1 ------------SLSAY------------KTVVVGTDGSDSSMRAVDRAAQIAGADAKLI 36 ::::: ::::::: : ::::::::::::::::::: d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG-V---GVAGLQAIATAKRLGAVVM 56 d1tq8a_ 37 IASAYLPTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNV 96 :::: :: :::::::: : ::::::::::: :::::::: :::::::::: d1l7da1 57 ATDV-----RA-ATKEQVES--L-----GGKFITVKKQA-EAVLKELV--KTDIAITTAL 100 d1tq8a_ 97 GLSTIAGRLLG-----------------SV-PANVSR------RAKVDVLIVH-TT---- 127 :::: :: :: : :::::: ::::::: :: d1l7da1 101 IPGK--PA-PVLITEEMVTKMKPGSVII-DLAVEAGGNCPLSE---PGKIVVKHGVKIVG 153 d1tq8a_ 128 ------- 128 d1l7da1 154 HTNVPSR 160 HHsearch alignment (Probability: 0.09 E-value:0.16) d1tq8a_ 21 AVDRAAQIAGADAKLIIASAYLPTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALV 80 :::::::::::::::::::::::: :::::::::::::::: ::::::: d1l7da1 40 AGLQAIATAKRLGAVVMATDVRAA---------TKEQVESLGGKFITVK----KQAEAVL 86 d1tq8a_ 81 NLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKV 119 :::: ::::::::::::::::::: ::::::::::: d1l7da1 87 KELV--KTDIAITTALIPGKPAPVL---ITEEMVTKMKP 120