Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq8a_ | Hypothetical protein Rv1636 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1e19a_ | Carbamate kinase | Carbamate kinase-like | Carbamate kinase-like | α/β |
Query <-- 1.545 --> IntermediateDALI alignment (Z-score: 6.9 Raw score:470.90) query 1 dadeevysalvvglrayvaKNGFRSVLIGLSGGIDSALVAAIACDALG-aQNVYGVSMPS 59 ::::::::::::::::::::::::::::: :::::::::: d1tq8a_ 1 ------------------sLSAYKTVVVGTDGSDSSMRAVDRAAQIAGadAKLIIASAYL 42 query 60 KysSDHSKGDAAELARRTG------LNFRTVSIepmfdaymaslgltglaeenlqsrLRG 113 : :::::::::::::::: :::::::: ::: d1tq8a_ 43 P--TAPIYEILHDAKERAHnagaknVEERPIVG------------------------APV 76 query 114 TTLMAISNQEGH-IVLAPGNksELAVgystlygdsvgaygpikdvyktsifrlaewrnra 172 :::::::::::: ::::::: :::: d1tq8a_ 77 DALVNLADEEKAdLLVVGNV--GLST---------------------------------- 100 query 173 aaergqtppipeasitkpdypvldailelyvdrdtgadaivaagydrelvvktlrmvdta 232 d1tq8a_ 101 ------------------------------------------------------------ 101 query 233 eykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1tq8a_ 101 -------iagrllgsvpanvsrrakvdvlivhtt 127 FAST alignment (Normalized score: 4.47 Raw score:821.20) query 1 DADEEVYSALVVGLRAYVAKN---GFRSVLIGLSGGIDSALVAAIACDALGAQ-----NV 52 ::::::::::::::::::::::::: :: d1tq8a_ 1 ---------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQI----AGADAKL 35 query 53 YGVSMPSKYS----SDHSKGDAAELARRTG-LNFRTVSIEPMFDAYMASLGLTGLAEENL 107 ::::::: :::::::::::::::: ::::::::: d1tq8a_ 36 IIASAYL---PTAPIYEILHDAKERAHNAGAKNVEERPIV-------------------- 72 query 108 QSR-LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRL 165 :::::::::::::: :::::::: d1tq8a_ 73 ---GAPVDALVNLADEEKADLLVVGNV--------------------------------- 96 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKT 225 d1tq8a_ 97 ------------------------------------------------------------ 97 query 226 LRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------------- 266 d1tq8a_ 97 -----------------------------------------GLSTIAGRLLGSVPANVSR 115 query 267 ------------ 267 d1tq8a_ 116 RAKVDVLIVHTT 127 TMalign alignment (TM-score: 0.34 Raw score:89.30) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA-QNVYGVSMPS 59 ::::::::::::::::::::::::::::::: :::::::::: d1tq8a_ 1 ------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYL 42 query 60 K-YSSDHSKGDAAELARRTG------LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLR 112 : :: ::::::::::::: :::::: : : :: d1tq8a_ 43 PT--AP-IYEILHDAKERAHNAGAKNVEERPI-V--G---------------------AP 75 query 113 GTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNR 171 ::::::::::::: ::::::: : : d1tq8a_ 76 VDALVNLADEEKADLLVVGNV--G----L------------------------------- 98 query 172 AAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDT 231 : ::: : d1tq8a_ 99 -----------------------------------------------------S-TIA-G 103 query 232 AEYKRRQYPPGTKISAKG-FG------KDRRLPITNRWREGH 266 :::::: ::::::::: : : d1tq8a_ 104 RLLGSV-PANVSRRAK-VD-VLIVHTT--------------- 127 HHsearch alignment (Probability: 0.11 E-value:0.02) query 23 FRSVLIGLSGGIDSALVAAIACDAL---GAQNVYGVSMPSKYSSDHSKGDAAELARRTGL 79 ::::::::::::::::::::::::: ::: :::::::::::::::::::::::::::: d1tq8a_ 5 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKL-IIASAYLPTAPIYEILHDAKERAHNAGA 63 query 80 NFRTVSI 86 ::::::: d1tq8a_ 64 KNVEERP 70
Intermediate <-- 1.196 --> HitDALI alignment (Z-score: 4.2 Raw score:450.40) d1tq8a_ 1 slsaYKTVVVGT--DGSD-------------ssmRAVDRAAQIAGADAKLIIASAYLP-- 43 :::::::: :::: :::::::::::::::::::::::: d1e19a_ 1 ----GKRVVIALggNALQqrgqkgsyeemmdnvrKTARQIAEIIARGYEVVITHGNGPqv 56 d1tq8a_ 44 -------------------------TAPIYEILHDAKERAHNAG---------------- 62 ::::::::::::::::::: d1e19a_ 57 gslllhmdagqatygipaqpmdvagAMSQGWIGYMIQQALKNELrkrgmekkvvtiitqt 116 d1tq8a_ 63 ------------------------------------------------------------ 63 d1e19a_ 117 ivdkndpafqnptkpvgpfydeetakrlarekgwivkedsgrgwrrvvpspdpkghveae 176 d1tq8a_ 63 -------akNVEER-PIVG-----------------APVDALVNLADEEKADLLVVGNVG 97 ::::: :::: :::::::::::::::::::::::: d1e19a_ 177 tikklvergVIVIAsGGGGvpviledgeikgveaviDKDLAGEKLAEEVNADIFMILTDV 236 d1tq8a_ 98 ----------------------lstiagrLLGS--------------------------- 108 :::: d1e19a_ 237 ngaalyygtekeqwlrevkveelrkyyeeGHFKagsmgpkvlaairfiewggeraiiahl 296 d1tq8a_ 109 vpanvsrraKVDVLIVHtt 127 :::::::: d1e19a_ 297 ekavealegKTGTQVLP-- 313 FAST alignment (Normalized score: 4.24 Raw score:844.90) d1tq8a_ 1 SLSAYKTVVVGTDG------------------SDSSMRAVDRAAQIAGADAKLIIASAYL 42 ::::::: :::::::::::::::::::::::::::: d1e19a_ 1 ----GKRVVIA---LGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNG 53 d1tq8a_ 43 PT-----------------------------APIYEILHDAKERAHNAGAK--------- 64 :::::::::::::::: d1e19a_ 54 --PQVGSLLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKN----ELRKRGMEK 107 d1tq8a_ 65 ------------------------------------------------------------ 65 d1e19a_ 108 KVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSP 167 d1tq8a_ 65 ------------------NVEERPIV----------------------GAPVDALVNLAD 84 :::: :::::::::::: d1e19a_ 168 DPKGHVEAETIKKLVERGVIVI----ASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 223 d1tq8a_ 85 EEKADLLVVGNVG---------LSTIAGRLLGSVPANVSRRAKVD--------------- 120 :::::::::: :::: d1e19a_ 224 EVNADIFMIL---TDVNGAALYYGTE-------------------KEQWLREVKVEELRK 261 d1tq8a_ 121 ---------------------------------------------VLIVHTT- 127 :::::: d1e19a_ 262 YYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVL-P 313 TMalign alignment (TM-score: 0.61 Raw score:77.00) d1tq8a_ 1 SLSAYKTVVVGT-D--GS-------------DSSMRAVDRAAQIAGADAKLIIASAYL-- 42 :: :::::: : :: : ::::::::::::::::::::::::: d1e19a_ 1 ---GK-RVVIALGGNALQQRGQKGSYEEMMDN-VRKTARQIAEIIARGYEVVITHGNGPQ 55 d1tq8a_ 43 P-------------------------TAPIYEILHDAKERAHNAG----A-K-------- 64 : ::::::::::::::::::: : : d1e19a_ 56 VGSLLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQ 115 d1tq8a_ 65 ------------------------------------------------------------ 65 d1e19a_ 116 TIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEA 175 d1tq8a_ 65 ----------NVEER-P-IV----------------GAPVDALVNLADEEKADLLVVGNV 96 ::::: : :: :::::::::::::::::::::::: d1e19a_ 176 ETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTD 235 d1tq8a_ 97 G------LSTIAGRLL--GSVPA------------------------------------- 111 : ::: ::::: d1e19a_ 236 VNGAALY------YGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE 289 d1tq8a_ 112 ----NVSR-RAKV--DV--L----IVHTT 127 :: :: :: : :::: d1e19a_ 290 RAII--AHL--EKAVEALEGKTGTQVLP- 313 HHsearch alignment (Probability: 0.03 E-value:0.17) d1tq8a_ 6 KTVVVGTDGSD 16 ::::::::::: d1e19a_ 2 KRVVIALGGNA 12