Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq8a_ | Hypothetical protein Rv1636 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1o97d1 | Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
Query <-- 1.545 --> IntermediateDALI alignment (Z-score: 6.9 Raw score:470.90) query 1 dadeevysalvvglrayvaKNGFRSVLIGLSGGIDSALVAAIACDALG-aQNVYGVSMPS 59 ::::::::::::::::::::::::::::: :::::::::: d1tq8a_ 1 ------------------sLSAYKTVVVGTDGSDSSMRAVDRAAQIAGadAKLIIASAYL 42 query 60 KysSDHSKGDAAELARRTG------LNFRTVSIepmfdaymaslgltglaeenlqsrLRG 113 : :::::::::::::::: :::::::: ::: d1tq8a_ 43 P--TAPIYEILHDAKERAHnagaknVEERPIVG------------------------APV 76 query 114 TTLMAISNQEGH-IVLAPGNksELAVgystlygdsvgaygpikdvyktsifrlaewrnra 172 :::::::::::: ::::::: :::: d1tq8a_ 77 DALVNLADEEKAdLLVVGNV--GLST---------------------------------- 100 query 173 aaergqtppipeasitkpdypvldailelyvdrdtgadaivaagydrelvvktlrmvdta 232 d1tq8a_ 101 ------------------------------------------------------------ 101 query 233 eykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1tq8a_ 101 -------iagrllgsvpanvsrrakvdvlivhtt 127 FAST alignment (Normalized score: 4.47 Raw score:821.20) query 1 DADEEVYSALVVGLRAYVAKN---GFRSVLIGLSGGIDSALVAAIACDALGAQ-----NV 52 ::::::::::::::::::::::::: :: d1tq8a_ 1 ---------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQI----AGADAKL 35 query 53 YGVSMPSKYS----SDHSKGDAAELARRTG-LNFRTVSIEPMFDAYMASLGLTGLAEENL 107 ::::::: :::::::::::::::: ::::::::: d1tq8a_ 36 IIASAYL---PTAPIYEILHDAKERAHNAGAKNVEERPIV-------------------- 72 query 108 QSR-LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRL 165 :::::::::::::: :::::::: d1tq8a_ 73 ---GAPVDALVNLADEEKADLLVVGNV--------------------------------- 96 query 166 AEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKT 225 d1tq8a_ 97 ------------------------------------------------------------ 97 query 226 LRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------------- 266 d1tq8a_ 97 -----------------------------------------GLSTIAGRLLGSVPANVSR 115 query 267 ------------ 267 d1tq8a_ 116 RAKVDVLIVHTT 127 TMalign alignment (TM-score: 0.34 Raw score:89.30) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA-QNVYGVSMPS 59 ::::::::::::::::::::::::::::::: :::::::::: d1tq8a_ 1 ------------------SLSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYL 42 query 60 K-YSSDHSKGDAAELARRTG------LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLR 112 : :: ::::::::::::: :::::: : : :: d1tq8a_ 43 PT--AP-IYEILHDAKERAHNAGAKNVEERPI-V--G---------------------AP 75 query 113 GTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNR 171 ::::::::::::: ::::::: : : d1tq8a_ 76 VDALVNLADEEKADLLVVGNV--G----L------------------------------- 98 query 172 AAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDT 231 : ::: : d1tq8a_ 99 -----------------------------------------------------S-TIA-G 103 query 232 AEYKRRQYPPGTKISAKG-FG------KDRRLPITNRWREGH 266 :::::: ::::::::: : : d1tq8a_ 104 RLLGSV-PANVSRRAK-VD-VLIVHTT--------------- 127 HHsearch alignment (Probability: 0.11 E-value:0.02) query 23 FRSVLIGLSGGIDSALVAAIACDAL---GAQNVYGVSMPSKYSSDHSKGDAAELARRTGL 79 ::::::::::::::::::::::::: ::: :::::::::::::::::::::::::::: d1tq8a_ 5 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKL-IIASAYLPTAPIYEILHDAKERAHNAGA 63 query 80 NFRTVSI 86 ::::::: d1tq8a_ 64 KNVEERP 70
Intermediate <-- 1.954 --> HitDALI alignment (Z-score: 6.8 Raw score:467.90) d1tq8a_ 1 slsayKTVVVGTD-----GSDSSMRAVDRAAQIAG-ADAKLIIASAYLPtAPIYEILhda 54 :::::::: ::::::::::::::::: ::::::::::::: ::::::: d1o97d1 1 -----SKILVIAEhrrndLRPVSLELIGAANGLKKsGEDKVVVAVIGSQaDAFVPAL--- 52 d1tq8a_ 55 KERAhnagaknVEERPIVG--------APVDALVNLADEEKADLLVVGNVG--------- 97 :::: :::::::: :::::::::::::::::::::::: d1o97d1 53 SVNG------vDELVVVKGssidfdpdVFEASVSALIAAHNPSVVLLPHSVdslgyassl 106 d1tq8a_ 98 ------------------------------------------------------------ 98 d1o97d1 107 asktgygfatdvyiveyqgdelvatrggynqkvnvevdfpgkstvvltirpsvfkplega 166 d1tq8a_ 98 --------------------lSTIAgrllgsvpanvsrrakvdvlivhtt 127 :::: d1o97d1 167 gspvvsnvdapsvqsrsqnkdYVEV------------------------g 192 FAST alignment (Normalized score: 5.46 Raw score:852.80) d1tq8a_ 1 SLSAYKTVVVGTD------GSDSSMRAVDRAAQIA-GADAKLIIASAYLPT-APIYEILH 52 ::::::: :::::::::::::::: ::::::::::: :::::::: d1o97d1 1 -----SKILVIA-EHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVI----GSQADAFVP 50 d1tq8a_ 53 DAKERAHNAGAKN-----VEERPIVG----------APVDALVNLADEEKADLLVVGNVG 97 :: :::::: :::::::::::::::::::::: d1o97d1 51 AL-----------SVNGVDELVVV--KGSSIDFDPDVFEASVSALIAAHNPSVVLLPH-- 95 d1tq8a_ 98 LSTIAGRLLGSVPANVSRRAKVDVLIVHTT------------------------------ 127 d1o97d1 96 ------------------------------SVDSLGYASSLASKTGYGFATDVYIVEYQG 125 d1tq8a_ 128 ------------------------------------------------------------ 128 d1o97d1 126 DELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQN 185 d1tq8a_ 128 ------- 128 d1o97d1 186 KDYVEVG 192 TMalign alignment (TM-score: 0.62 Raw score:78.55) d1tq8a_ 1 SLSAYKTVVVGTD-----GSDSSMRAVDRAAQIA-GADAKLIIASAYLPTAPIYEILHDA 54 :::::::: :::::::::::::::: ::::::::::::::::::::::: d1o97d1 1 -----SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALS-- 53 d1tq8a_ 55 KERAHNAGAKNVEERPIVG--------APVDALVNLADEEKADLLVVGNVGL-STIAGRL 105 :::: :::::::: ::::::::::::::::::::::::: : d1o97d1 54 -VNGV------DELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDS-----L- 100 d1tq8a_ 106 LGSV----------PANVSRRAKVD-----------V----------LIV-HTT------ 127 :::: :: : ::: : ::: ::: d1o97d1 101 GYASSLASKTGYGFAT--D---VYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTI 155 d1tq8a_ 128 ------------------------------------- 128 d1o97d1 156 RPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVG 192 HHsearch alignment (Probability: 0.94 E-value:0.00) d1tq8a_ 7 TVVVGTDGS-----DSSMRAVDRAAQIAGADAKLIIASAYLPTAPIYEILHDAKERAHNA 61 ::::::::: :::::::::::::::::::::::::::::::: :::::::: d1o97d1 2 KILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADA------FVPALSVN 55 d1tq8a_ 62 GAKNVEERPI------VGAPVDALVNLADEEKADLLVVGNVGLS 99 :::::::::: :::::::::::::::::::::::::::: d1o97d1 56 GVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDS 99