Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1k92a1 | Argininosuccinate synthetase, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1v3ua2 | Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.588 --> IntermediateDALI alignment (Z-score: 11.2 Raw score:922.90) query 1 dadeevysalvvGLRAyvakngfRSVLIGLSGGIDSALVAAIACDALGaqNVYGVSMPSK 60 :::: ::::::::::::::::::::::::: :::::::::: d1k92a1 1 -------ttilkHLPV------gQRIGIAFSGGLDTSAALLWMRQKGA--VPYAYTANLG 45 query 61 Y-SSDHsKGDAAELARRTGL-NFRTVSIEPMFDAYMASLG-----------ltGLAEENL 107 : :::: ::::::::::::: ::::::::::::::::::: ::::::: d1k92a1 46 QpDEED-YDAIPRRAMEYGAeNARLIDCRKQLVAEGIAAIqcgafhnttggltYFNTTPL 104 query 108 QSRLRGTTLMAISNQEGH-IVLAPGNKselavGYST-lyGDSV--------gAYGPIKD- 156 :::::::::::::::::: :::::::: :::: :::: ::::::: d1k92a1 105 GRAVTGTMLVAAMKEDGVnIWGDGSTY-----KGNDierFYRYglltnaelqIYKPWLDt 159 query 157 --vyktSIFRLAEWRNRAAAergqtppipeasITKPDYpvldailelyvdrdtgadaiva 214 :::::::::::::: :::::: d1k92a1 160 dfidelGGRHEMSEFMIACG---------fdyKMSVEK---------------------- 188 query 215 agydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1k92a1 189 ---------------------------------------------------- 189 FAST alignment (Normalized score: 6.79 Raw score:1519.00) query 1 DADEEVYSALVVGLRAYVAKNGF----------RSVLIGLSGGIDSALVAAIACDALGAQ 50 :::::::::::::::::::::: d1k92a1 1 -----------------------TTILKHLPVGQRIGIAFSGGLDTSAALLWMRQ----- 32 query 51 ---NVYGVSMPSKYSSDH------SKGDAAELARRTG-LNFRTVSIEPMFDAYMA---SL 97 ::::::::: ::::::::::::: ::::::::::::::::: :: d1k92a1 33 KGAVPYAYTANL------GQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQC 86 query 98 GLTG----------LAEENLQSRLRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTLY-- 144 :: ::::::::::::::::::::::: :::::::::: d1k92a1 87 GA--FHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYK----------GN 134 query 145 ----GDSVG---------AYGPIKD----------VYKTSIFRLAEWRNRAAAERGQTPP 181 :::: :::: :::::::::::: d1k92a1 135 DIERFYRY-GLLTNAELQIYKP---WLDTDFIDELGGRHEMSEFMIA------------- 177 query 182 IPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPP 241 d1k92a1 178 ------------------------------------------------------------ 178 query 242 GTKISAKGFGKDRRLPITNRWREGH----------- 266 d1k92a1 178 -------------------------CGFDYKMSVEK 188 TMalign alignment (TM-score: 0.49 Raw score:130.18) query 1 ----DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVS 56 ::: :: :::::::::::::::::::::::::: :::::: d1k92a1 1 TTIL-----------KHL---PV---GQRIGIAFSGGLDTSAALLWMRQKGA--VPYAYT 41 query 57 MPSKYSSDHSKGDAAELARRTGL-NFRTVSIEPMFDAYMASLG---LT--------GLAE 104 ::::::::::::::::::::::: ::::::::::::::::::: :: :::: d1k92a1 42 ANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT 101 query 105 ENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTL-YGDS--V-------GAYGP 153 ::::::::::::::::::::: :::::: :: ::::: ::: : ::::: d1k92a1 102 TPLGRAVTGTMLVAAMKEDGVNIWGDGS---TY--KGNDIE-RFYRYGLLTNAELQIYKP 155 query 154 IKD---VY-KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGA 209 ::: :: ::::::::::::::: : ::: ::: :: d1k92a1 156 WLDTDFIDE-LGGRHEMSEFMIACG-----F-DYK--MSV-EK----------------- 188 query 210 DAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 266 d1k92a1 189 --------------------------------------------------------- 189 HHsearch alignment (Probability: 0.97 E-value:0.00) query 24 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGL-NFR 82 ::::::::::::::::::::::: ::::::::::::::::::::::::::::::: ::: d1k92a1 11 QRIGIAFSGGLDTSAALLWMRQK--GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENAR 68 query 83 TVSIEPMFDAYMASLGLTGLAEENLQSR-----------LRGTTLMAISNQEGHIVLAPG 131 :::::::::::::::::::::::::::: ::::::::::::::::::::: d1k92a1 69 LIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDG 128 query 132 ------NKSELAVGYSTLYGDSVGAYGPIKDVY-------KTSIFRLAEWRNRAAAERGQ 178 :::::::::::::::::: :::::::: :::::::::::::::::::: d1k92a1 129 STYKGNDIERFYRYGLLTNAELQI-YKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVE 187 query 179 T 179 : d1k92a1 188 K 188
Intermediate <-- 1.616 --> HitDALI alignment (Z-score: 6.0 Raw score:557.70) d1k92a1 1 --------------------ttiLKHLPVGQRIGIA-FSGGlDTSAALLWMRQKGAVPYA 39 ::::::::::::: :::: :::::::::::::::::: d1v3ua2 1 lplslalgtigmpgltayfglleVCGVKGGETVLVSaAAGA-VGSVVGQIAKLKGCKVVG 59 d1k92a1 40 YTAnlgqpdeedYDAIPRRAMEYGAENARLIDCrkqlvaegiaaiqcgafhnttggltyf 99 ::: ::::::::::::::::::::: d1v3ua2 60 AAG---------SDEKIAYLKQIGFDAAFNYKT--------------------------- 83 d1k92a1 100 nttplgravtgtMLVAAMKEDG---VNIWGDGStykgndIERFYRYGLlTNAE--LQIYK 154 :::::::::: :::::::: ::::::::: :::: ::::: d1v3ua2 84 ----------vnSLEEALKKASpdgYDCYFDNV------GGEFLNTVL-SQMKdfGKIAI 126 d1k92a1 155 P-------------------------wldtdfidelgGRHEMSEFMIACgfdykmsvek 188 : :::::::::::: d1v3ua2 127 CgaislppgpspesiiykqlriegfivyrwqgdvrekALRDLMKWVLEG---------- 175 FAST alignment (Normalized score: 5.84 Raw score:1060.00) d1k92a1 1 TTILKHL---------------------------PVGQRIGIAF--SGGLDTSAALLWMR 31 :::::::: :::::::::::::: d1v3ua2 1 -------LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLV--SAAAGAVGSVVGQIAK 51 d1k92a1 32 QKGAVPYAYTANLGQPDEED-YDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFH 90 :::::::::: :::::::::::::::::: d1v3ua2 52 LKGCKVVGAA----------GSDEKIAYLKQIGFDAAFN--------------------- 80 d1k92a1 91 NTTGGLTYFNTTPL-----GRAVTGTMLVAAMKED---GVNIWGDGSTYK--GNDIERFY 140 ::::::::: :::::::: :::::::: d1v3ua2 81 --------------YKTVNSLEEALKKA-------SPDGYDCYFDN----VGGEFLNTVL 115 d1k92a1 141 RYGLLTNAELQIYKPWLDTDFIDELG---------------------------------G 167 :: ::::::::: : d1v3ua2 116 SQ---MKDFGKIAI------------CGAISLPPGPSPESIIYKQLRIEGFIVYRWQGDV 160 d1k92a1 168 RHEMSEFMIACGFDYKMSVEK----- 188 :::::::::: d1v3ua2 161 REKALRDLMK-----------WVLEG 175 TMalign alignment (TM-score: 0.39 Raw score:73.86) d1k92a1 1 ------------TTILKHLPVGQRIGIAFSGGLDTSAALLW--MRQKGAVPYAYTANLGQ 46 ::::::::::: :: ::::::::::: : d1v3ua2 1 LPLSLALGTIGM------------------PGLTAYFGLLEVCGV--KGGETVLVSAA-A 39 d1k92a1 47 PDEE-DYDAIPRRAMEYGAENARLI------------------D-CRKQL-VA------- 78 :: :::::::::: :::::::: : ::::: : d1v3ua2 40 --GAV-GSVVGQIAKL-KGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNS-LEEALKKA 94 d1k92a1 79 -----------EGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGD 127 :::::::::::: : ::::::: d1v3ua2 95 SPDGYDCYFDN--------------------------VGGEFLNTVLSQ-M--KDFGKIA 125 d1k92a1 128 GSTYKGND-IERFYRYGLLTN-AELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYK-- 183 ::: :: ::: ::::::: ::::::::: : :::::::::::::: ::::: d1v3ua2 126 ICG---AIS-LPP-GPSPESIIYKQLRIEGF-----I-VYRWQGDVREKALR-DLMKWVL 173 d1k92a1 184 --MSVEK 188 d1v3ua2 174 EG----- 175 HHsearch alignment (Probability: 0.13 E-value:0.01) d1k92a1 6 HLPVGQRIGIA-FSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGA 64 ::::::::::: :::::::: :::::::::::::::::: : ::::::::::: d1v3ua2 26 GVKGGETVLVSAAAGAVGSV-VGQIAKLKGCKVVGAAGS-----D----EKIAYLKQIGF 75 d1k92a1 65 ENAR 68 :::: d1v3ua2 76 DAAF 79