Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1sura_ | Phosphoadenylyl sulphate (PAPS) reductase | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1ep3b2 | Dihydroorotate dehydrogenase B, PyrK subunit | Ferredoxin reductase-like, C-terminal NADP-linked domain | Ferredoxin reductase-like, C-terminal NADP-linked domain | α/β |
Query <-- 2.210 --> IntermediateDALI alignment (Z-score: 11.1 Raw score:953.30) query 1 ----------------------dadeevysALVVGLRAYVAKNGFrSVLIGLSGGIDSAL 38 ::::::::::::::: :::::::::::::: d1sura_ 1 skldlnalnelpkvdrilalaetnaeleklDAEGRVAWALDNLPG-EYVLSSSFGIQAAV 59 query 39 VAAIACDALGAqnVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIePMFDAYMASLG 98 ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::: d1sura_ 60 SLHLVNQIRPD--IPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRAtESAAWQEARYG 117 query 99 L---TGLAEENLQSR-LRGTTLMAISNQEGH-IVLAPGNKSElAVGY----stlygdsvg 149 : ::::::::::: ::::::::::::::: :::::::::: :::: d1sura_ 118 KlweQGVEGIEKYNDiNKVEPMNRALKELNAqTWFAGLRREQ-SGSRanlpvlaiqrgvf 176 query 150 AYGPIKDVYKTSIFRLAEWRNraaaergqtppipEASITKpdypvldailelyvdrdtga 209 ::::::::::::::::::::: :::::: d1sura_ 177 KVLPIIDWDNRTIYQYLQKHG------------lKYHPLW-------------------- 204 query 210 daivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1sura_ 205 ----------------------------------------------degylsvgdth 215 FAST alignment (Normalized score: 7.94 Raw score:1898.00) query 1 DADEEVYS------------------------------ALVVGLRAYVAKNGFRSVLIGL 30 :::::::::::::: ::::::: d1sura_ 1 --------SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLP-GEYVLSS 51 query 31 SGGIDSALVAAIACDALGAQ-NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEP- 88 ::::::::::::::::: ::::::::::::::::::::::::::::::::::: d1sura_ 52 SFGIQAAVSLHLVNQIR---PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYR---A 105 query 89 --MFDAYMASLGL-----TGLAEENLQSR-LRGTTLMAISNQEG-HIVLAPGNKSELAVG 139 ::::::::: ::::::::::: :::::::::::::: ::::::::: d1sura_ 106 TESAAWQEARY--GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRR------ 157 query 140 YSTLYGDSVG-------------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTP 180 ::::::::::::::::::: d1sura_ 158 ----------EQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQK------------ 195 query 181 ---PIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRR 237 :::: d1sura_ 196 HGLKYHP----------------------------------------------------- 202 query 238 QYPPGTKISAKGFGKDRRLPITNRWREGH------------- 266 d1sura_ 203 -----------------------------LWDEGYLSVGDTH 215 TMalign alignment (TM-score: 0.49 Raw score:131.05) query 1 -----------------------------DADEEVYSALVVGLRAYVAKNGFRSVLIGLS 31 :::::::::::::::::::::: : d1sura_ 1 SKLDLNALNELPKVDRILALAETNAELEK-------LDAEGRVAWALDNLPGEYVLSS-S 52 query 32 GGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMF- 90 ::::::::::::::::: : ::::::::::::::::::::::::::::::::::::::: d1sura_ 53 FGIQAAVSLHLVNQIRP-D-IPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAA 110 query 91 -DAYMASLGL-TGLAEENLQSR-LRGTTLMAISNQEGH-IVLAPGNKSELAVGY------ 140 ::::::::: ::::::::::: ::::::::::::::: ::::::::::: ::: d1sura_ 111 WQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL 169 query 141 --STLYGDSV--GAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK--PDYP- 193 :: :::::::::::::::::::::: : :::::: ::: d1sura_ 170 AI------QRGVFKVLPIIDWDNRTIYQYLQKHG-----------L-KYHPLWDE-GYLS 210 query 194 -----VLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAK 248 d1sura_ 211 VGDTH------------------------------------------------------- 215 query 249 GFGKDRRLPITNRWREGH 266 d1sura_ 216 ------------------ 216 HHsearch alignment (Probability: 0.96 E-value:0.00) query 3 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYS 62 :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: d1sura_ 24 NAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQI--RPDIPVILTDTGYL 81 query 63 SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG-----LTGLAEENLQSRLRGTTLM 117 :::::::::::::::::::::::::::::::::::: ::::::::::::::::::: d1sura_ 82 FPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNR 141 query 118 AISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYG---PIKDVYKTSIFRLAEWRNRA 172 ::::::::::::::::::::::::::::::::::: :::::::::::::::::::: d1sura_ 142 ALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLK 199
Intermediate <-- 0.885 --> HitDALI alignment (Z-score: 3.3 Raw score:314.10) d1sura_ 1 skldlnalnelpkvdrilalaetnaelekldAEGRVAwaldnlpgeYVLSS---SFGIqA 57 :::::: ::::: :::: : d1ep3b2 1 -------------------------------PVAEVT-----stdkILIIGggiGVPP-L 23 d1sura_ 58 AVSLHLVNQIRPDIPVILTD-TGYLfpetyrFIDELTDKLK-LNLKVYRATESaawqear 115 :::::::::::::::::::: :::: :::::::::: ::::::::::: d1ep3b2 24 YELAKQLEKTGCQMTILLGFaSENV-----kILENEFSNLKnVTLKIATDDGS------- 71 d1sura_ 116 ygklweqgvegiekyndinkvEPMNRALKELN--aqTWFAglrreqsgsranlpvlaiQR 173 ::::::::::: :::: :: d1ep3b2 72 -----------------ygtkGHVGMLMNEIDfevdALYT--------cgapamlkavAK 106 d1sura_ 174 GV---FKVL---------piidwdnrtiyqylqkhglkyhplwdegylsvgdth 215 :: :::: d1ep3b2 107 KYdqlERLYismesrmacgigacyacvehdkedeshalkvcedgpvflgkqlsl 160 FAST alignment (Normalized score: 2.31 Raw score:428.30) d1sura_ 1 SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWA-LDNLP---GEYVLSSSFGIQ 56 :::: ::::::: :::: d1ep3b2 1 ---------------------------------------PVAEV-TSTDKILIIG-GGIG 19 d1sura_ 57 AAVSLHLVNQIR-----PDIPVILTDTGYLFPE------TYRFIDELTDK--LKLNLKVY 103 ::: ::::::: :::::::::: :::::: :::::::: d1ep3b2 20 VPP-LYELAKQ-LEKTGCQMTILLGFA------SENVKILENEFS-----NLKNVTLKIA 66 d1sura_ 104 RATESAAWQEARYGKLWEQGVEGIEKYNDINKV--------EPMNRALKE--LNAQTWFA 153 : ::::::::: :::::::: d1ep3b2 67 T--------------------------------DDGSYGTKGHVGMLMNEIDFEVDALYT 94 d1sura_ 154 GLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213 d1ep3b2 95 ------------------------------------------------------------ 95 d1sura_ 214 TH---------------------------------------------------------- 215 d1ep3b2 95 --CGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALKVCEDGPV 152 d1sura_ 216 -------- 216 d1ep3b2 153 FLGKQLSL 160 TMalign alignment (TM-score: 0.36 Raw score:76.65) d1sura_ 1 SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALD-NLPGEYVLSSSFGIQAAV 59 :::: :: ::::::::: :::::: d1ep3b2 1 ----------------------------------PVAE-VTS--TDKILIIGG-GIGVPP 22 d1sura_ 60 SLHLVNQIRP--D--IPVILTDTGYLFPETYRFIDELTDKLKL-NLKVYRA-TESAA--- 110 ::: :::::: : ::::::: :::::: ::::::: ::: ::::::: ::: d1ep3b2 23 LYE-LAKQLEKTGCQMTILLGF---ASENVK-ILENEFS-NLKNVTLKIATD--DGSYGT 74 d1sura_ 111 WQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGS--RANL-- 166 : :::::::::: ::::::::::: ::: : d1ep3b2 75 -------------------K--GHVGMLMNEI--DFEVDALYTCG----APAML---KAV 104 d1sura_ 167 PVLAIQRGV-FKVLPIIDW-DN-RT----------------------------------I 189 ::::::: :::: :::: :: :: d1ep3b2 105 --AKKYDQLERLYI-SMESRMACGIGACYACVEHDKEDESHALKVCEDGPVFLGKQLSL- 160 d1sura_ 190 YQYLQKHGLKYHPLWDEGYLSVGDTH 215 d1ep3b2 161 -------------------------- 161 HHsearch alignment (Probability: 0.44 E-value:0.01) d1sura_ 45 GEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYR 104 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: d1ep3b2 8 TDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIAT 67 d1sura_ 105 ATESAAWQ--EARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQT 150 :::::::: :::::::::::::::::::::::::::::::::::::: d1ep3b2 68 DDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLY 115