Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ni5a1 | Putative cell cycle protein MesJ, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 2.482 --> IntermediateDALI alignment (Z-score: 13.9 Raw score:1114.50) query 1 dadeevysALVVGLRAYVAknGFRSVLIGLSGGIDSALVAAIACDALG---aQNVYGVSM 57 ::::::::::: ::::::::::::::::::::::::::: :::::::: d1ni5a1 1 --------SMTLTLNRQLL--TSRQILVAFSGGLDSTVLLHQLVQWRTenpgVALRAIHV 50 query 58 PSKYS--SDHSKGDAAELARRTGLNFRTVSIEpmFDAYmaslgltgLAEE-NLQSRLRGT 114 ::::: ::::::::::::::::::::::::: :::: :::: ::::::::: d1ni5a1 51 HHGLSanADAWVTHCENVCQQWQVPLVVERVQ--LAQE--------GLGIeAQARQARYQ 100 query 115 TLMAISNqEGHIVLAPGNKSELAVGY-----------------stlygdsvgAYGPIKDV 157 ::::::: :::::::::::::::::: :::::::: d1ni5a1 101 AFARTLL-PGEVLVTAQHLDDQCETFllalkrgsgpaglsamaevsefagtrLIRPLLAR 159 query 158 YKTSIFRLAEWRNraaaergqtppIPEASitkpdypvldailelyvdrdtgadaivaagy 217 ::::::::::::: ::::: d1ni5a1 160 TRGELVQWARQYD-----------LRWIE------------------------------d 178 query 218 drelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1ni5a1 179 esnqddsydrnflrlrvvpllqqrwphfaeatarsaalcaeqeslldel 227 FAST alignment (Normalized score: 8.92 Raw score:2193.00) query 1 DADEEVYSA-LVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ-------NV 52 ::::::::: :::::::::::::::::::::::::: :: d1ni5a1 1 ---------SMTLTLNRQL--LTSRQILVAFSGGLDSTVLLHQLVQW----RTENPGVAL 45 query 53 YGVSMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE-----E 105 :::::::::: :::::::::::::::::::::::: :::: : d1ni5a1 46 RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV-----QLAQ---------EGLGIE 91 query 106 NLQSRLRGTTLMAISNQ--EGHIVLAPGNKSELAVGYSTLYGDSVG-------------- 149 :::::::::::::: ::::::::::::::: d1ni5a1 92 AQARQARYQAFART---LLPGEVLVTAQHLDDQC------------ETFLLALKRGSGPA 136 query 150 ---------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP---- 190 ::::::::::::::::::: d1ni5a1 137 GLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQ----------------------YDLR 174 query 191 -------------------------------DYPVLDAILELYVDRDTGADAIVAAGYDR 219 :::::::::::::: d1ni5a1 175 WIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE--------------- 219 query 220 ELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH-------- 266 d1ni5a1 220 -----------------------------------------------QESLLDEL 227 TMalign alignment (TM-score: 0.55 Raw score:147.16) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--A-QNVYGVSM 57 ::::::::::: : :::::::::::::::::::::::::: : :::::::: d1ni5a1 1 --------SMTLTLNRQLL-T-SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHV 50 query 58 PSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEE-NLQSRLRGT 114 ::::: ::::::::::::::::::::::::: : : ::: ::: ::::::::: d1ni5a1 51 HHGLSANADAWVTHCENVCQQWQVPLVVERVQ--L---A----QEG-LGIEAQARQARYQ 100 query 115 TLMAISNQEGHIVLAPGNKSELAVG-YS-----------------TLYGDS-V---GAYG 152 :::::: :::::::::::::::::: :: : : :::: d1ni5a1 101 AFARTL-LPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV-----SEFAGTRLIR 154 query 153 PIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK-------------PD-YPVLDAI 198 :::::::::::::::::: : :::::: :: ::::::: d1ni5a1 155 PLLARTRGELVQWARQYD-----------L-RWIEDESNQDDSYDRNFLRLRVVPLLQQR 202 query 199 LELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLP- 257 :::::: : : :::::::::: d1ni5a1 203 WPHFAE-A----------------------T------------------ARSAALCAEQE 221 query 258 ------ITNRWREGH 266 d1ni5a1 222 SLLDEL--------- 227 HHsearch alignment (Probability: 0.96 E-value:0.00) query 24 RSVLIGLSGGIDSALVAAIACDALGAQ---NVYGVSMPSKYSS--DHSKGDAAELARRTG 78 ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::: d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 query 79 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLA--------- 129 :::::::::: :::::::::::::::::::::::::::::::: d1ni5a1 74 VPLVVERVQL---------AQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 query 130 --------PGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERG 177 :::::::::::::::::::: ::::::::::::::::::::::::::: d1ni5a1 125 FLLALKRGSGPAGLSAMAEVSEFAGTRL-IRPLLARTRGELVQWARQYDLRWIEDE 179
Intermediate <-- 1.048 --> HitDALI alignment (Z-score: 3.9 Raw score:313.00) d1ni5a1 1 ----------smtlTLNRQlLTSRQILVAFSgGLDSTVLLHQLVQWRtenpgVALRAIHV 50 ::::: ::::::::::: ::::::::::::::: :::::::: d1onfa2 1 fppvkgientissdEFFNI-KESKKIGIVGS-GYIAVELINVIKRLG-----IDSYIFAR 53 d1ni5a1 51 HH-glsaNADAWVTHCENVCQQWQVPLVVErvqlaqeglgieaqarqaRYQA-------- 101 :: ::::::::::::::::::::::: :::: d1onfa2 54 GNrilrkFDESVINVLENDMKKNNINIVTF-----------------aDVVEikkvsdkn 96 d1ni5a1 102 --FART---lLPGE-VLVTAQhlddqcetfllalkrgsgpaglsamaevsefagtrlirp 155 :::: :::: :::::: d1onfa2 97 lsIHLSdgriYEHFdHVIYCV--------------------------------------- 117 d1ni5a1 156 llartrgelvqwarqydlrwiedesnqddsydrnflrlrvvpllqqrwphfaeatarsaa 215 d1onfa2 118 ------------------------------------------------------------ 118 d1ni5a1 216 lcaeqeslldel 227 d1onfa2 118 ------------ 118 FAST alignment (Normalized score: 3.17 Raw score:516.50) d1ni5a1 1 SM------------TLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAI 48 ::::: :::::::::: :::::::::::::::: :::::::: d1onfa2 1 --FPPVKGIENTISSDEFF-NIKESKKIGI-VGSGYIAVELINVIKR-----LGIDSYIF 51 d1ni5a1 49 HVHHGLSAN---------ADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARY 99 : :::::::::::::::::::: d1onfa2 52 A--------RGNRILRKFDESVINVLENDMKKNNINIV---------------------- 81 d1ni5a1 100 QAFARTLLPG-----------------------------EVLVTAQHLDDQCETFLLALK 130 ::::: d1onfa2 82 ----------TFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIY---------------- 115 d1ni5a1 131 RGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNF 190 d1onfa2 116 ------------------------------------------------------------ 116 d1ni5a1 191 LRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDEL-- 227 d1onfa2 116 -------------------------------------CV 117 TMalign alignment (TM-score: 0.28 Raw score:63.58) d1ni5a1 1 --------------SMTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALR 46 ::::::: ::::::::: ::::::::::::::: :::: d1onfa2 1 FPPVKGIENTISSD----EFFNIKE-SKKIGIVGS-GYIAVELINVIKRLG-----IDSY 49 d1ni5a1 47 AIHVHH---GLSAN--ADAW-VTH-CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARY 99 :::::: :: :: :: :::::::::::::: :: :: d1onfa2 50 IFARGNRIL---RKFD--ESV-INVLENDMKKNNINIVT-FA----------------DV 86 d1ni5a1 100 QA----------FAR----TLLPGE-VLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV 144 :: ::: ::: :: :::::: d1onfa2 87 VEIKKVSDKNLSIHLSDGRIYE-HFDHVIYCV---------------------------- 117 d1ni5a1 145 SEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWP 204 d1onfa2 118 ------------------------------------------------------------ 118 d1ni5a1 205 HFAEATARSAALCAEQESLLDEL 227 d1onfa2 118 ----------------------- 118 HHsearch alignment (Probability: 0.19 E-value:0.02) d1ni5a1 9 QLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGL-SANADAWVTHCEN 67 :::::::::: :::::::::::::::: :::::::::::::: ::::::::::::: d1onfa2 18 NIKESKKIGI-VGSGYIAVELINVIKR-----LGIDSYIFARGNRILRKFDESVINVLEN 71 d1ni5a1 68 VCQQWQVPLVVER 80 ::::::::::::: d1onfa2 72 DMKKNNINIVTFA 84