Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad2+3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ni5a1 | Putative cell cycle protein MesJ, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1q1ra2 | Putidaredoxin reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 2.482 --> IntermediateDALI alignment (Z-score: 13.9 Raw score:1114.50) query 1 dadeevysALVVGLRAYVAknGFRSVLIGLSGGIDSALVAAIACDALG---aQNVYGVSM 57 ::::::::::: ::::::::::::::::::::::::::: :::::::: d1ni5a1 1 --------SMTLTLNRQLL--TSRQILVAFSGGLDSTVLLHQLVQWRTenpgVALRAIHV 50 query 58 PSKYS--SDHSKGDAAELARRTGLNFRTVSIEpmFDAYmaslgltgLAEE-NLQSRLRGT 114 ::::: ::::::::::::::::::::::::: :::: :::: ::::::::: d1ni5a1 51 HHGLSanADAWVTHCENVCQQWQVPLVVERVQ--LAQE--------GLGIeAQARQARYQ 100 query 115 TLMAISNqEGHIVLAPGNKSELAVGY-----------------stlygdsvgAYGPIKDV 157 ::::::: :::::::::::::::::: :::::::: d1ni5a1 101 AFARTLL-PGEVLVTAQHLDDQCETFllalkrgsgpaglsamaevsefagtrLIRPLLAR 159 query 158 YKTSIFRLAEWRNraaaergqtppIPEASitkpdypvldailelyvdrdtgadaivaagy 217 ::::::::::::: ::::: d1ni5a1 160 TRGELVQWARQYD-----------LRWIE------------------------------d 178 query 218 drelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 266 d1ni5a1 179 esnqddsydrnflrlrvvpllqqrwphfaeatarsaalcaeqeslldel 227 FAST alignment (Normalized score: 8.92 Raw score:2193.00) query 1 DADEEVYSA-LVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ-------NV 52 ::::::::: :::::::::::::::::::::::::: :: d1ni5a1 1 ---------SMTLTLNRQL--LTSRQILVAFSGGLDSTVLLHQLVQW----RTENPGVAL 45 query 53 YGVSMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE-----E 105 :::::::::: :::::::::::::::::::::::: :::: : d1ni5a1 46 RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV-----QLAQ---------EGLGIE 91 query 106 NLQSRLRGTTLMAISNQ--EGHIVLAPGNKSELAVGYSTLYGDSVG-------------- 149 :::::::::::::: ::::::::::::::: d1ni5a1 92 AQARQARYQAFART---LLPGEVLVTAQHLDDQC------------ETFLLALKRGSGPA 136 query 150 ---------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP---- 190 ::::::::::::::::::: d1ni5a1 137 GLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQ----------------------YDLR 174 query 191 -------------------------------DYPVLDAILELYVDRDTGADAIVAAGYDR 219 :::::::::::::: d1ni5a1 175 WIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE--------------- 219 query 220 ELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH-------- 266 d1ni5a1 220 -----------------------------------------------QESLLDEL 227 TMalign alignment (TM-score: 0.55 Raw score:147.16) query 1 DADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--A-QNVYGVSM 57 ::::::::::: : :::::::::::::::::::::::::: : :::::::: d1ni5a1 1 --------SMTLTLNRQLL-T-SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHV 50 query 58 PSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEE-NLQSRLRGT 114 ::::: ::::::::::::::::::::::::: : : ::: ::: ::::::::: d1ni5a1 51 HHGLSANADAWVTHCENVCQQWQVPLVVERVQ--L---A----QEG-LGIEAQARQARYQ 100 query 115 TLMAISNQEGHIVLAPGNKSELAVG-YS-----------------TLYGDS-V---GAYG 152 :::::: :::::::::::::::::: :: : : :::: d1ni5a1 101 AFARTL-LPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV-----SEFAGTRLIR 154 query 153 PIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK-------------PD-YPVLDAI 198 :::::::::::::::::: : :::::: :: ::::::: d1ni5a1 155 PLLARTRGELVQWARQYD-----------L-RWIEDESNQDDSYDRNFLRLRVVPLLQQR 202 query 199 LELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLP- 257 :::::: : : :::::::::: d1ni5a1 203 WPHFAE-A----------------------T------------------ARSAALCAEQE 221 query 258 ------ITNRWREGH 266 d1ni5a1 222 SLLDEL--------- 227 HHsearch alignment (Probability: 0.96 E-value:0.00) query 24 RSVLIGLSGGIDSALVAAIACDALGAQ---NVYGVSMPSKYSS--DHSKGDAAELARRTG 78 ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::: d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 query 79 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLA--------- 129 :::::::::: :::::::::::::::::::::::::::::::: d1ni5a1 74 VPLVVERVQL---------AQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 query 130 --------PGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERG 177 :::::::::::::::::::: ::::::::::::::::::::::::::: d1ni5a1 125 FLLALKRGSGPAGLSAMAEVSEFAGTRL-IRPLLARTRGELVQWARQYDLRWIEDE 179
Intermediate <-- 1.165 --> HitDALI alignment (Z-score: 4.1 Raw score:327.80) d1ni5a1 1 ----------------------SMTLTLNRQLLtsRQILVAFSgGLDSTVLLHQLVQWRt 38 ::::::::::: :::::::: ::::::::::::::: d1q1ra2 1 rplpvasgavgkannfrylrtlEDAECIRRQLIadNRLVVIGG-GYIGLEVAATAIKAN- 58 d1ni5a1 39 enpgVALRAIHVHH--glSANADAWVTHCENVCQQWQVPLVVErvqlaqeglgieaqarq 96 :::::::::: ::::::::::::::::::::::::: d1q1ra2 59 ----MHVTLLDTAArvleRVTAPPVSAFYEHLHREAGVDIRTG----------------- 97 d1ni5a1 97 aryqAFAR-----------------tlLPGE-VLVTAQHlddqcetfllalkrgsgpagl 138 :::: :::: ::::::: d1q1ra2 98 ---tQVCGfemstdqqkvtavlcedgtRLPAdLVIAGIG--------------------- 133 d1ni5a1 139 samaevsefagtrlirpllartrgelvqwarqydlrwiedesnqddsydrnflrlrvvpl 198 d1q1ra2 134 ------------------------------------------------------------ 134 d1ni5a1 199 lqqrwphfaeatarsaalcaeqeslldel 227 d1q1ra2 134 ----------------------------- 134 FAST alignment (Normalized score: 3.22 Raw score:560.00) d1ni5a1 1 S-----------------------MTLTLNRQLLTS---RQILVAFSGGLDSTVLLHQLV 34 ::::::::: ::::: ::::::::::::::: d1q1ra2 1 -RPLPVASGAVGKANNFRYLRTLEDAECIRRQL---IADNRLVV-IGGGYIGLEVAATAI 55 d1ni5a1 35 QWRTENPGVALRAIHV-----HHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLG 89 : ::::::::: ::::: :::::::::::::::::::: d1q1ra2 56 K-----ANMHVTLLD-TAARVLERVT--APPVSAFYEHLHREAGVDIR------------ 95 d1ni5a1 90 IEAQARQARYQAFARTLLPG------------------------------EVLVTAQHLD 119 :::::: d1q1ra2 96 --------------------TGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG---- 131 d1ni5a1 120 DQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDE 179 d1q1ra2 132 ------------------------------------------------------------ 132 d1ni5a1 180 SNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDEL-- 227 d1q1ra2 132 ------------------------------------------------IG 133 TMalign alignment (TM-score: 0.30 Raw score:67.51) d1ni5a1 1 ---------------------SMTLT-LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRT 38 ::::: :::::::::::::::: : :::::::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGG-G---YIGLEVAATAIK 56 d1ni5a1 39 ENPGVALRAIHVHHGLSANADAWV---T-HCENVCQQW--Q-VPLVVERVQLAQEGLGIE 91 :: :::::::::: ::::: : ::::::::: : ::::::: d1q1ra2 57 -AN-MHVTLLDTAA-----RVLERVTAPPVSAFYEHLHREAGVDIRTGT----------- 98 d1ni5a1 92 AQARQARYQA------------FAR---TLLPGEVLVTAQHLDDQCETFLLALKRGSGPA 136 :::: ::: :::::::::::: : d1q1ra2 99 ------QVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI---G---------------- 133 d1ni5a1 137 GLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVV 196 d1q1ra2 134 ------------------------------------------------------------ 134 d1ni5a1 197 PLLQQRWPHFAEATARSAALCAEQESLLDEL 227 d1q1ra2 134 ------------------------------- 134 HHsearch alignment (Probability: 0.12 E-value:0.04) d1ni5a1 7 NRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA--NADAWVTH 64 :::::::::::: :::::::::::::::: :::::::::::::::: :::::::: d1q1ra2 29 RRQLIADNRLVV-IGGGYIGLEVAATAIK-----ANMHVTLLDTAARVLERVTAPPVSAF 82 d1ni5a1 65 CENVCQQWQVPLVVE 79 ::::::::::::::: d1q1ra2 83 YEHLHREAGVDIRTG 97