Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1dgwa_ | Seed storage 7S protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1ft9a2 | CO-sensing protein CooA, N-terminal domain | cAMP-binding domain-like | Double-stranded beta-helix | All β |
Query <-- 0.953 --> IntermediateDALI alignment (Z-score: 8.6 Raw score:536.90) query 1 meinadfTKPVVIDTDQLEWRPSPmKGVERRMLDRI-------ggevARATSIVRYAPGS 53 ::::::::::::::::: ::::::::::: ::::::::::::: d1dgwa_ 1 -------NNPYLFRSNKFLTLFKN-QHGSLRLLQRFnedteklenlrDYRVLEYCSKPNT 52 query 54 RFSAHTHDGGEEFIVLDGVFQDE--------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 ::::::::::::::::::::::: :::::::::::::::::::::::: :: d1dgwa_ 53 LLLPHHSDSDLLVLVLEGQAILVlvnpdgrdTYKLDQGDAIKIQAGTPFYLINPDnnqNL 112 query 103 TIFVKLwQFDP----------------------------------------------adr 116 :::::: :::: d1dgwa_ 113 RILKFA-ITFRrpgtvedfflsstkrlpsylsafsknfleasydspydeieqtllqeeqe 171 query 117 tqfsknm 123 d1dgwa_ 172 gvivkmp 178 FAST alignment (Normalized score: 5.55 Raw score:820.80) query 1 MEINADFTK--PVVIDT-DQLEWRPSP---MKGVERRMLDRIGGEV-------------- 40 ::::: ::::: ::::::::: d1dgwa_ 1 ---------NNPYLFR-SNKFLT----LFKNQHGSLRLL-------QRFNEDTEKLENLR 39 query 41 ARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE---------HGDYPAGTYVRNPPT 91 ::::::::::::::::::::::::::::::::::: ::::::::::::::: d1dgwa_ 40 DYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAIL-VLVNPDGRDTYKLDQGDAIKIQAG 98 query 92 TSHVPGS---AEGCTIFVKLWQFDPADRTQFSKNM------------------------- 123 ::::::: ::::::::: d1dgwa_ 99 TPFYLINPDNNQNLRILKF----------------AITFRRPGTVEDFFLSSTKRLPSYL 142 query 124 ------------------------------------ 124 d1dgwa_ 143 SAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178 TMalign alignment (TM-score: 0.60 Raw score:74.01) query 1 -MEINADFTKPVVIDTDQLEWRPSPMK-GVERRMLDRI-----------GGEVARATSIV 47 ::::::: ::::::::: :::::::::: ::::::: d1dgwa_ 1 N--------NPYLFRS--NKFLTLFKNQHGSLRLLQRFNEDTEKLENLR----DYRVLEY 46 query 48 RYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------HGDYPAGTYVRNPPTTSHVPGSA 99 ::::::::::::::::::::::::::::: ::::::::::::::::::::::: d1dgwa_ 47 CSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINP 106 query 100 E---GCTIFVKLWQFDP------------------------------------------- 113 : :::::::: :::: d1dgwa_ 107 DNNQNLRILKFA-ITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTL 165 query 114 -------------ADRTQFSKNM 123 d1dgwa_ 166 LQEEQEGVIVKMP---------- 178 HHsearch alignment (Probability: 0.95 E-value:0.00) query 29 ERRMLDRIGGE-------VARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQDEH---- 77 ::::::::::: :::::::::::::::::::::::::::::::::::::: d1dgwa_ 21 SLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPD 80 query 78 ----GDYPAGTYVRNPPTTSHVPGSAEG--CTIFVKLWQFDPADRT 117 :::::::::::::::::::::::: :::::::::::::::: d1dgwa_ 81 GRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGT 126
Intermediate <-- 0.901 --> HitDALI alignment (Z-score: 3.4 Raw score:285.60) d1dgwa_ 1 ---------nnpYLFRSnkfltlfknqhgslrllqrfnedteklenlrdyrVLEYCSKPN 51 ::::: ::::::::: d1ft9a2 1 pprfnianvllsPDGET------------------------------ffrgFRSKIHAKG 30 d1dgwa_ 52 TLLLPHHSDSDLLVLVLEGQAILVlVNPD--GRDTYKLDQGDAIKIQagtPFYLINPdnn 109 :::::::::::::::::::::::: :::: :::::::::::::::: ::::::: d1ft9a2 31 SLVCTGEGDENGVFVVVDGRLRVY-LVGEerEISLFYLTSGDMFCMH--sGCLVEAT--- 84 d1dgwa_ 110 qNLRILKFAITfrrpgtvedfflsstkrlpsylsafsknfleasydspydeieqtllqee 169 :::::::::: d1ft9a2 85 eRTEVRFADIR---------------------tfeqklqtcpsmawgliailgraltscm 123 d1dgwa_ 170 qegvivkmp 178 d1ft9a2 124 rtiedlmfh 132 FAST alignment (Normalized score: 3.41 Raw score:522.70) d1dgwa_ 1 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDY------------------- 41 d1ft9a2 1 -----------------------------------------PPRFNIANVLLSPDGETFF 19 d1dgwa_ 42 -RVLEYCSKPNTLLLPHH---SDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQ 96 :::::::::::::: ::::::::::::::::::::::::: ::::::::::: d1ft9a2 20 RGFRSKIHAKGSLVC---TGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-- 74 d1dgwa_ 97 AG--TPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASY 154 :::::::: ::::::::: d1ft9a2 75 --MHSGCLVEAT---ERTEVRFAD------------------------------------ 93 d1dgwa_ 155 DSPYDEIEQTLLQEEQEGVIVKMP------------------------------------ 178 d1ft9a2 94 ------------------------IRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDL 129 d1dgwa_ 179 --- 179 d1ft9a2 130 MFH 132 TMalign alignment (TM-score: 0.30 Raw score:53.22) d1dgwa_ 1 --------------------NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRD 40 d1ft9a2 1 PPRFNIANVLLSPDGETFFR---------------------------------------- 20 d1dgwa_ 41 YRVLEYCSKPNTLLLP--HHSDSDLLVLVLEGQAILVLV-----NPDGRDTYKLDQGDAI 93 ::::::::::::::: :::: ::::::::::::::: :::::::::::: d1ft9a2 21 -GFRSKIHAKGSLVCTGEGDEN--GVFVVVDGRLRVYLVGEERE----ISLFYLTSGDMF 73 d1dgwa_ 94 KIQAGTPFYLINPDNNQNLRILKFAITF-------------------------------- 121 : ::::::::::: ::::::::::: d1ft9a2 74 -C-MHSGCLVEATE---RTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIED 128 d1dgwa_ 122 ----RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177 d1ft9a2 129 LMFH-------------------------------------------------------- 132 d1dgwa_ 178 P 178 d1ft9a2 133 - 133 HHsearch alignment (Probability: 0.90 E-value:0.00) d1dgwa_ 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK-LDQGDAIKIQAGTP 100 ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: d1ft9a2 21 GFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHSG-- 78 d1dgwa_ 101 FYLINPDNNQ 110 :::::::::: d1ft9a2 79 CLVEATERTE 88