Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1vj2a_ | Hypothetical protein TM1459 | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1qwra_ | Mannose-6-phosphate isomerase ManA | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.969 --> IntermediateDALI alignment (Z-score: 11.8 Raw score:636.30) query 1 meinadftkPVVIDTDQLEWRPSP---MKGVERRMLDRIGgevaRATSIVRYAPGSRFSA 57 ::::::::::::::: ::::::::::::: :::::::::::::::: d1vj2a_ 1 ---------MILKRAYDVTPQKIStdkVRGVRKRVLIGLKdapnFVMRLFTVEPGGLIDR 51 query 58 HTHDGGEEFIVLDGVFQDE----HGDYPAGTYVRNPPTTSHVPGSAE--GCTIFVKLWQF 111 ::::::::::::::::::: :::::::::::::::::::::::: ::::::::::: d1vj2a_ 52 HSHPWEHEIFVLKGKLTVLkeqgEETVEEGFYIFVEPNEIHGFRNDTdsEVEFLCLIPKE 111 query 112 dpadrtqfsknm 123 d1vj2a_ 112 ---------gge 114 FAST alignment (Normalized score: 9.80 Raw score:1161.00) query 1 MEINADFTKPVVIDTDQLEWRPS----PMKGVERRMLDRIGGEVA-------RATSIVRY 49 ::::::::::::: ::::::::::: :::::::: d1vj2a_ 1 ---------MILKRAYDVTPQK-ISTDKVRGVRKRVLI-------GLKDAPNFVMRLFTV 43 query 50 APGSRFSAHTHDGGEEFIVLDGVFQDE-----HGDYPAGTYVRNPPTTSHVPGS--AEGC 102 :::::::::::::::::::::::::: :::::::::::::::::::::: :::: d1vj2a_ 44 EPGGLIDRHSHPWEHEIFVLKGKLTV-LKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEV 102 query 103 TIFVKLWQFDPADRTQFSKNM----- 123 ::::::: d1vj2a_ 103 EFLCLIP--------------KEGGE 114 TMalign alignment (TM-score: 0.68 Raw score:83.64) query 1 MEINADFTKPVVIDTDQLEWRPSP---MKGVERRMLDRIG----GEVARATSIVRYAPGS 53 ::::::::::::::: ::::::::::::: :::::::::::: d1vj2a_ 1 ---------MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPN----FVMRLFTVEPGG 47 query 54 RFSAHTHDGGEEFIVLDGVFQD----EHGDYPAGTYVRNPPTTSHVPGSAE--GCTIFVK 107 :::::::::::::::::::::: ::::::::::::::::::::::::: ::::::: d1vj2a_ 48 LIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL 107 query 108 LWQF---DPADRTQFSKNM 123 :::: d1vj2a_ 108 IPKEGGE------------ 114 HHsearch alignment (Probability: 0.97 E-value:0.00) query 13 IDTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGV 72 :::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: d1vj2a_ 9 VTPQKISTDK--VRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGK 66 query 73 ----FQDEHGDYPAGTYVRNPPTTSHVPGS--AEGCTIFV 106 :::::::::::::::::::::::::: :::::::: d1vj2a_ 67 LTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC 106
Intermediate <-- 0.973 --> HitDALI alignment (Z-score: 8.7 Raw score:538.90) d1vj2a_ 1 ------------------------------------------------------------ 1 d1qwra_ 1 tqspifltpvfkekiwggtalrdrfgysipsestgecwaisahpkgpstvangpykgktl 60 d1vj2a_ 1 ------------------------------------------------------------ 1 d1qwra_ 61 ielweehrevfggvegdrfplltklldvkedtsikvhpddyyageneegelgktecwyii 120 d1vj2a_ 1 -------------------------------------MILKRA----------------- 6 :::::: d1qwra_ 121 dckenaeiiyghtarsktelvtminsgdwegllrrikIKPGDFyyvpsgtlhalckgalv 180 d1vj2a_ 7 ---------------------------------------------ydVTPQKIstdkvRG 21 :::::: :: d1qwra_ 181 letqqnsdatyrvydydrldsngsprelhfakavnaatvphvdgyidESTESR-----KG 235 d1vj2a_ 22 VRKRVLIGlkdAPNFVMRLFTVEpgGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEG 81 :::::::: :::::::::::: ::::::::::::::::::::::::::::::::::: d1qwra_ 236 ITIKTFVQ---GEYFSVYKWDIN--GEAEMAQDESFLICSVIEGSGLLKYEDKTCPLKKG 290 d1vj2a_ 82 FYIFVEPNEI-HGFRNdtdsEVEFLCLIPkegge 114 :::::::::: ::::: ::::::::: d1qwra_ 291 DHFILPAQMPdFTIKG----TCTLIVSHI----- 315 FAST alignment (Normalized score: 5.24 Raw score:993.40) d1vj2a_ 1 M----------------------------------------------------------- 1 d1qwra_ 1 -TQSPIFLTPVFKEKIWGGTALRDRFGYSIPSESTGECWAISAHPKGPSTVANGPYKGKT 59 d1vj2a_ 2 ------------------------------------------------------------ 2 d1qwra_ 60 LIELWEEHREVFGGVEGDRFPLLTKLLDVKEDTSIKVHPDDYYAGENEEGELGKTECWYI 119 d1vj2a_ 2 ------------------------------------------------------------ 2 d1qwra_ 120 IDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKGAL 179 d1vj2a_ 2 --------------------------------------------ILKRAYDVTPQKISTD 17 :::: ::::: d1qwra_ 180 VLETQQNSDATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYID---ESTES---- 232 d1vj2a_ 18 KVRGVRKRVLIGLKD-APNFVMRLFTVEPGGLIDRHSHP--WEHEIFVLKGKLTVLKEQG 74 :::::::::: :::::::::::: ::::::: ::::::::::::::::::: d1qwra_ 233 -RKGITIKTFV----QGEYFSVYKWDIN--GEAEMAQ--DESFLICSVIEGSGLLKYEDK 283 d1vj2a_ 75 EETVEEGFYIFVEPN-EIHGFRNDTDS--EVEFLCLIPKEGGE- 114 ::::::::::::::: ::::: :::::::: d1qwra_ 284 TCPLKKGDHFILPAQMPDFTI------KGTCTLIVSH------I 315 TMalign alignment (TM-score: 0.68 Raw score:77.29) d1vj2a_ 1 ------------------------------------------------------------ 1 d1qwra_ 1 TQSPIFLTPVFKEKIWGGTALRDRFGYSIPSESTGECWAISAHPKGPSTVANGPYKGKTL 60 d1vj2a_ 1 ------------------------------------------------------MILKR- 5 ::::: d1qwra_ 61 IELWEEHREVFGGVEGDRFPLLTKLLDVKEDTSIKVHPDDYYAGENEEGELGKTECWYII 120 d1vj2a_ 6 ---------------------------------------AYDV----------------- 9 :::: d1qwra_ 121 DCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALCKGALV 180 d1vj2a_ 10 -----------------------------------------------TPQKISTDKVRGV 22 :::::: ::: d1qwra_ 181 LETQQNSDATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESR----KGI 236 d1vj2a_ 23 RKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGF 82 ::::: :: :::::::::::: ::::: ::::::::::::::::::::::::::::::: d1qwra_ 237 TIKTF-VQ--GEYFSVYKWDIN-GEAEM-AQDESFLICSVIEGSGLLKYEDKTCPLKKGD 291 d1vj2a_ 83 YIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE 114 ::::::::::::::: ::::::::: d1qwra_ 292 HFILPAQMPDFTIKG---TCTLIVSHI----- 315 HHsearch alignment (Probability: 0.97 E-value:0.00) d1vj2a_ 20 RGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVE 79 ::::::::: ::::::::::::: ::::::::::::::::::::::::::::::::: d1qwra_ 234 KGITIKTFV---QGEYFSVYKWDIN--GEAEMAQDESFLICSVIEGSGLLKYEDKTCPLK 288 d1vj2a_ 80 EGFYIFVEPNEI-HGFRND 97 :::::::::::: :::::: d1qwra_ 289 KGDHFILPAQMPDFTIKGT 307