Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1pmia_ | Phosphomannose isomerase | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.970 --> HitDALI alignment (Z-score: 7.3 Raw score:582.00) d1lrha_ 1 ------------------------------------------------------------ 1 d1pmia_ 1 sseklfriqcgyqnydwgkigsssavaqfvhnsdpsitidetkpyaelwmgthpsvpska 60 d1lrha_ 1 ------------------------------------------------------------ 1 d1pmia_ 61 idlnnqtlrdlvtakpqeylgesiitkfgsskelpflfkvlsiekvlsiqahpdkklgaq 120 d1lrha_ 1 ------------------------------------------------------------ 1 d1pmia_ 121 lhaadpknypddnhkpemaiavtdfegfcgfkpldqlaktlatvpelneiigqelvdefi 180 d1lrha_ 1 ------------------------------------------------------------ 1 d1pmia_ 181 sgiklpaevgsqddvnnrkllqkvfgklmntdddvikqqtakllertdrepqvfkdidsr 240 d1lrha_ 1 --------------------------------scVRDNSL-------------------- 8 :::::: d1pmia_ 241 lpeliqrlnkqfpndiglfcgclllnhvglnkgeAMFLQAkdphayisgdiiecmaasdn 300 d1lrha_ 9 ---------------------------vrdisQMPQ-ssygIEGLSHITVAGalnhGMKE 40 :::: ::::::::::: :::: d1pmia_ 301 vvragftpkfkdvknlvemltysyesvekqkmPLQEfprskGDAVKSVLYDP----PIAE 356 d1lrha_ 41 VEVWLQTISP--GQRTPIHRHSCEEVFTVLKGKGTLLMGssslkyPGQPQEIPFFQNTTF 98 :::::::::: ::::::::::::::::::::::::::: ::::::::::::::: d1pmia_ 357 FSVLQTIFDKskGGKQVIEGLNGPSIVIATNGKGTIQIT------GDDSTKQKIDTGYVF 410 d1lrha_ 99 SIPVNDPHQVWNSD--EHEDLQVLVIISRPpakiflyddwsmphtaavlkfpfvwdedcf 156 :::::::::::::: :::::::::::::: d1pmia_ 411 FVAPGSSIELTADSanQDQDFTTYRAFVEA------------------------------ 440 d1lrha_ 157 eaak 160 d1pmia_ 441 ---- 441 FAST alignment (Normalized score: 4.22 Raw score:1119.00) d1lrha_ 1 SCVRDN----SLVRDISQMPQSSYGIEGL-----------------------------SH 27 :::: :::: :::: :: d1pmia_ 1 ------SSEKLFRI---QCGY--QNYD--WGKIGSSSAVAQFVHNSDPSITIDETKPYAE 47 d1lrha_ 28 ITV-AGALNHGM--------------------------------------KEVEVWLQTI 48 ::: :::: :::::::::: d1pmia_ 48 LWMGTHPS----VPSKAIDLNNQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSI 103 d1lrha_ 49 SPGQRTPIHRH---------------------SCEEVFTVLKGKGTLLMGSSSLKYPG-- 85 ::::::::: ::::::::: ::::::: d1pmia_ 104 --EKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAV-TDFEGFC---------GF 151 d1lrha_ 86 ------------------------------------------------------------ 86 d1pmia_ 152 KPLDQLAKTLATVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNT 211 d1lrha_ 86 ----------------------------------------------------QPQEIPFF 93 :::::::: d1pmia_ 212 DDDVIKQQTAKLLERTDREPQVFKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLN 271 d1lrha_ 94 QNTTFSIPVNDPHQVWNSDEHED--LQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVW 151 ::::::::::::::: ::::::: ::::::::: d1pmia_ 272 KGEAMFLQAKDPHAY--------ISGDIIECM-AASDNVVRA------------------ 304 d1lrha_ 152 DEDCFEAAK--------------------------------------------------- 160 d1pmia_ 305 ---------GFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIA 355 d1lrha_ 161 ------------------------------------------------------------ 161 d1pmia_ 356 EFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPG 415 d1lrha_ 161 ------------------------- 161 d1pmia_ 416 SSIELTADSANQDQDFTTYRAFVEA 440 TMalign alignment (TM-score: 0.54 Raw score:86.80) d1lrha_ 1 ------------------------------------------------------------ 1 d1pmia_ 1 SSEKLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKA 60 d1lrha_ 1 ------------------------------------------------------------ 1 d1pmia_ 61 IDLNNQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQ 120 d1lrha_ 1 -----------------SCVRDNSL----------V------------------------ 9 : : d1pmia_ 121 LHAADPKNYPDDNHKPE-------MAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQ 173 d1lrha_ 10 ------------------------------------------------------------ 10 d1pmia_ 174 ELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQV 233 d1lrha_ 10 ----------------------------------R-D---IS------------------ 13 : : :: d1pmia_ 234 FKDIDSRLPELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIE 293 d1lrha_ 14 -------------------------------------QMPQSSY---GIEGLSHITVAGA 33 ::::::: :::::::::: : d1pmia_ 294 CMAASDNVVRAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLY-D- 351 d1lrha_ 34 LNHGMKEVEVWLQTISP--GQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIP 91 ::::::::::::::: ::::::::::::::::::::::::::: :::::::: d1pmia_ 352 --PPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQIT------GDDSTKQK 403 d1lrha_ 92 FFQNTTFSIPVNDPHQVWNSDE-H-EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPF 149 :::::::::::::::::::::: : :::::::::::: d1pmia_ 404 IDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA----------------------- 440 d1lrha_ 150 VWDEDCFEAAK 160 d1pmia_ 441 ----------- 441 HHsearch alignment (Probability: 0.97 E-value:0.00) d1lrha_ 38 MKEVEVWLQTISPGQ--RTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQN 95 ::::::::::::::: :::::::::::::::::::::::::: ::::::::::: d1pmia_ 354 IAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITG------DDSTKQKIDTG 407 d1lrha_ 96 TTFSIPVNDPHQVWNSDEHEDLQVLV 121 :::::::::::::::::::::::::: d1pmia_ 408 YVFFVAPGSSIELTADSANQDQDFTT 433