Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1o5ua_ | Hypothetical protein TM1112 | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.971 --> HitDALI alignment (Z-score: 5.9 Raw score:369.60) d1lrha_ 1 scvrdnslvrdisqmpqssygieglshitvagalnhgmkeveVWLQTISpGQRTpIHRHS 60 ::::::: :::: ::::: d1o5ua_ 1 -----------------------evkiekptpeklkelsvekWPIWEKE-VSEF-DWYYD 35 d1lrha_ 61 CEEVFTVLKGKGTLLMGssslkypgQPQEIPFFQNTTFSIPVNDPHQVWNSDeheDLQVL 120 ::::::::::::::::: ::::::::::::::::::::::::::: ::::: d1o5ua_ 36 TNETCYILEGKVEVTTE--------DGKKYVIEKGDLVTFPKGLRCRWKVLE---PVRKH 84 d1lrha_ 121 VIISrppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 :::: d1o5ua_ 85 YNLF------------------------------------ 88 FAST alignment (Normalized score: 6.09 Raw score:723.20) d1lrha_ 1 SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVE------------------ 42 d1o5ua_ 1 ------------------------------------------EVKIEKPTPEKLKELSVE 18 d1lrha_ 43 -VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPG-QPQEIPFFQNTTFSI 100 ::::::: ::: :::::::::::::::::::::: ::::::::::::::: d1o5ua_ 19 KWPIWEKE-VSE-FDWYYDTNETCYILEGKVEVTT---------EDGKKYVIEKGDLVTF 67 d1lrha_ 101 PVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160 :::::::::: ::::::::: d1o5ua_ 68 PKGLRCRWKV---LEPVRKHYN-------------------------------------- 86 d1lrha_ 161 -- 161 d1o5ua_ 87 LF 88 TMalign alignment (TM-score: 0.33 Raw score:52.66) d1lrha_ 1 ------------------------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNH 36 :: d1o5ua_ 1 EVKIEKPTPEKLKELSVEKWPIWE-------------------------------KE--- 26 d1lrha_ 37 GMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNT 96 ::::::::: ::::::::::::::::: ::: d1o5ua_ 27 ----VSEFDWYYD--TNETCYILEGKVEVTTE-------------------------DGK 55 d1lrha_ 97 TFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYD-DWSMPHTAAVLKFPFVWDEDC 155 :::::::::::::: ::::::::::: ::::::: d1o5ua_ 56 KYVIEKGDLVTFPK-----GLRCRWKVLEP-VRKHYNLF--------------------- 88 d1lrha_ 156 FEAAK 160 d1o5ua_ 89 ----- 89 HHsearch alignment (Probability: 0.97 E-value:0.00) d1lrha_ 46 QTISPGQRTPIHR-HSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVND 104 ::::::: ::: ::::::::::::::::::: ::::::::::::::::::: d1o5ua_ 23 WEKEVSE---FDWYYDTNETCYILEGKVEVTTE--------DGKKYVIEKGDLVTFPKGL 71 d1lrha_ 105 PHQVWNS 111 ::::::: d1o5ua_ 72 RCRWKVL 78