Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1juha_ | Quercetin 2,3-dioxygenase | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.993 --> HitDALI alignment (Z-score: 10.8 Raw score:869.60) d1lrha_ 1 ----sCVRD---NSLVRDISQM-PQSSygIEGLSHITVAGALnHGMKEVEVWLQTISPG- 51 :::: :::::::::: :::: ::::::::::::: :::::::::::::::: d1juha_ 1 sslivEDAPdhvRPYVIRHYSHaRAVT--VDTQLYRFYVTGP-SSGYAFTLMGTNAPHSd 57 d1lrha_ 52 -qRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLkypgQPQEIPFFQNTTFSIPVNDPHQVW 109 ::::::: :::::::::::::::::::::: :::::::::::::::::::::::: d1juha_ 58 alGVLPHIHqKHYENFYCNKGSFQLWAQSGNE----TQQTRVLSSGDYGSVPRNVTHTFQ 113 d1lrha_ 110 NSDehEDLQVLVIISRPPA-----------------------------KIFLYDDWS--- 137 ::: :::::::::::::: ::::::::: d1juha_ 114 IQD--PDTEMTGVIVPGGFedlfyylgtnatdtthtpyipsistlqsfDVYAELSFTprt 171 d1lrha_ 138 ------------------------------------------------------------ 138 d1juha_ 172 dtvngtapantvwhtganalastagdpyfiangwgpkylnsqygyqivapfvtatqaqdt 231 d1lrha_ 138 ------------------------------------------------------------ 138 d1juha_ 232 nytlstismsttpstvtvptwsfpgacafqvqegrvvvqigdyaatelgsgdvafipggv 291 d1lrha_ 138 --------------------mphtaavlkfpfvwdedcfeaak 160 d1juha_ 292 efkyyseayfskvlfvssgsdgldqnlvnggeewssvsfpadw 334 FAST alignment (Normalized score: 7.18 Raw score:1661.00) d1lrha_ 1 SC--------VRDNS-LVRDI-SQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTIS- 49 ::::: ::::: ::::: :::::::::::::::::: ::::::::::: d1juha_ 1 --SSLIVEDAPDHVRPYVIRHYSHARA--VTVDTQLYRFYVTGPSSG-YAFTLMGTNAPH 55 d1lrha_ 50 PGQ-RTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYP---GQPQEIPFFQNTTFSIPVND 104 ::: ::::::: :::::::::::::::::: :::::::::::::::::::: d1juha_ 56 SDALGVLPHIHQKHYENFYCNKGSFQLWAQ-------SGNETQQTRVLSSGDYGSVPRNV 108 d1lrha_ 105 PHQVWNSDEHEDLQVLVIISRPP------------------------------AKIFLYD 134 :::::::: :::::::::::: ::::::: d1juha_ 109 THTFQIQD--PDTEMTGVIVPG-GFEDLFYYLGTNATDTTHTPYIPSISTLQSFDVYAEL 165 d1lrha_ 135 DWSMPHTAAVLKFPFVWDEDCFEAAK---------------------------------- 160 d1juha_ 166 --------------------------SFTPRTDTVNGTAPANTVWHTGANALASTAGDPY 199 d1lrha_ 161 ------------------------------------------------------------ 161 d1juha_ 200 FIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACA 259 d1lrha_ 161 ------------------------------------------------------------ 161 d1juha_ 260 FQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNLV 319 d1lrha_ 161 --------------- 161 d1juha_ 320 NGGEEWSSVSFPADW 334 TMalign alignment (TM-score: 0.66 Raw score:105.22) d1lrha_ 1 ------SCVRD-N-SLVRDI--SQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISP 50 ::: : :::::: ::::::: ::::::::::::: ::::::::::::::: d1juha_ 1 SSLIVE--DAPDHVRPYVIRHYSHARAVT--VDTQLYRFYVTGP-SSGYAFTLMGTNAPH 55 d1lrha_ 51 G-Q-RTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQ 107 : : ::::::: :::::::::::::::::::::: : ::::::::::::::::::::: d1juha_ 56 SDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNE---T-QQTRVLSSGDYGSVPRNVTHT 111 d1lrha_ 108 VWNSDEHEDLQVLVIISRPPA----------------------------KIFLYDDWSM- 138 ::::: :::::::::::::: :::::::::: d1juha_ 112 FQIQD--PDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSISTLQSFDVYAELSFTP 169 d1lrha_ 139 ------------------------------------------------------------ 139 d1juha_ 170 RTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQ 229 d1lrha_ 139 ------------------------------------------------------------ 139 d1juha_ 230 DTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPG 289 d1lrha_ 139 ---------------------------------------------PHTAAVLKFPFVWDE 153 d1juha_ 290 GVEFKYYSEAYFSKVLFVSSGSDGLDQNLVNGGEEWSSVSFPADW--------------- 334 d1lrha_ 154 DCFEAAK 160 d1juha_ 335 ------- 335 HHsearch alignment (Probability: 0.99 E-value:0.00) d1lrha_ 30 VAGALNHGMKEVEVWLQTISPGQRTP--IHRHSC-EEVFTVLKGKGTLLMGSSSLKYPGQ 86 :::::::: :::::::::::::::: :::::: :::::::::::::::::::: : d1juha_ 37 VTGPSSGY--AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNE----T 90 d1lrha_ 87 PQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISR 125 ::::::::::::::::::::::::::: :::::::::: d1juha_ 91 QQTRVLSSGDYGSVPRNVTHTFQIQDP--DTEMTGVIVP 127