Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1sq4a_ | Glyoxylate-induced protein PA1140 | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.995 --> HitDALI alignment (Z-score: 8.8 Raw score:665.30) d1lrha_ 1 ---------------------scvrdnslvRDISQMPQSSYG-IEGLSHITvAGAL-nhG 37 :::::::::::: :::::::: :::: : d1sq4a_ 1 kssyyaphgghpalltdramfteayavipkGVMRDIVTSHLPfWDNMRMWV-IARPlsgF 59 d1lrha_ 38 MKEVEVWLQTISPGQRTPI-HRHS-CEEVFTVLKGKGTLLMGssslkypgqPQEIPFFQN 95 ::::::::::::::::::: :::: ::::::::::::::::: ::::::::: d1sq4a_ 60 AETFSQYIVELAPNGGSDKpEQDPnAEAVLFVVEGELSLTLQ---------GQVHAMQPG 110 d1lrha_ 96 TTFSIPVNDPHQVWNSDEhEDLQVLVIISR------------------------------ 125 :::::::::::::::::: ::::::::::: d1sq4a_ 111 GYAFIPPGADYKVRNTTG-QHTRFHWIRKHyqkvdgvplpeafvtneqdiqplvmpdteg 169 d1lrha_ 126 ------------------------------------------------------------ 126 d1sq4a_ 170 rwsttrfvdmsdmrhdmhvnivnfepggvipfaethvmehglyvlegkavyrlnqdwvev 229 d1lrha_ 126 ------ppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 d1sq4a_ 230 eagdfmwlrafcpqacysggpgrfryllykdvnrhmrltln 270 FAST alignment (Normalized score: 5.72 Raw score:1190.00) d1lrha_ 1 SCVRDNS-------------------------LVRDISQM---PQSSY-GIEGLSHITVA 31 :::::::: ::::: ::::::::: d1sq4a_ 1 -------KSSYYAPHGGHPALLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWV-- 51 d1lrha_ 32 GALNHG--------MKEVEVWLQTISPGQRTPIHR---------HSCEEVFTVLKGKGTL 74 :::::::::::::: :::::::::::::::: d1sq4a_ 52 ------IARPLSGFAETFSQYIVELAPN-------GGSDKPEQDPNAEAVLFVVEGELSL 98 d1lrha_ 75 LMGSSSLKYPGQ--PQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFL 132 : ::::::::::::::::::::::::: ::::::::::: d1sq4a_ 99 T-----------LQGQVHAMQPGGYAFIPPGADYKVRNT-TGQHTRFHWIR--------- 137 d1lrha_ 133 YDDWSMPHTAAVLKFPFVWDEDCFEAAK-------------------------------- 160 d1sq4a_ 138 ----------------------------KHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEG 169 d1lrha_ 161 ------------------------------------------------------------ 161 d1sq4a_ 170 RWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEV 229 d1lrha_ 161 ----------------------------------------- 161 d1sq4a_ 230 EAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRHMRLTLN 270 TMalign alignment (TM-score: 0.58 Raw score:93.12) d1lrha_ 1 ------------------SCVRDNS----LVRDISQM---PQSSYG-IEGLSHITVAGAL 34 ::: :::::::: :::::: ::::::::::: d1sq4a_ 1 KSSYYAPHGGHPALLTDR----AMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIAR-- 54 d1lrha_ 35 NHG--MKEVEVWLQTISPGQRTPIHR-H-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEI 90 ::: ::::::::::::::::::::: : :::::::::::::::::: :::: d1sq4a_ 55 PLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ---------GQVH 105 d1lrha_ 91 PFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRP------------------------ 126 ::::::::::::::::::::::: :::::::::::: d1sq4a_ 106 AMQPGGYAFIPPGADYKVRNTTG-QHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVM 164 d1lrha_ 127 ------------------------------------------------------------ 127 d1sq4a_ 165 PDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQ 224 d1lrha_ 127 ----------------------------------------------PAKIFLYDDWSMPH 140 d1sq4a_ 225 DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRHMRLTLN-------------- 270 d1lrha_ 141 TAAVLKFPFVWDEDCFEAAK 160 d1sq4a_ 271 -------------------- 271 HHsearch alignment (Probability: 1.00 E-value:0.00) d1lrha_ 29 TVAGALNHG-MKEVEVWLQTISPGQRTP-IHR-HSCEEVFTVLKGKGTLLMGSSSLKYPG 85 ::::::::: :::::::::::::::::: ::: :::::::::::::::::::: d1sq4a_ 50 WVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQG------- 102 d1lrha_ 86 QPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS 124 :::::::::::::::::::::::::: :::::::::: d1sq4a_ 103 --QVHAMQPGGYAFIPPGADYKVRNTTG-QHTRFHWIRK 138